|
Name : Thivi_4194 (Thivi_4194) Accession : YP_006416132.1 Strain : Thiocystis violascens DSM 198 Genome accession: NC_018012 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 4558340 - 4562512 bp Length : 4173 bp Strand : + Note : PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subuni DNA sequence : ATGGCCTATTCGTTCACCGAAAAAAAGCGCATCCGCAAAGACTTCGGCAAGCGTCCCAGCATTCTGGGCGTGCCGTTCCT CCTGGCCACGCAGATCGACTCCTACCGCGAGTTTCTGCAAGCCAATTCCTCGGTGAAGGACCGTCGGGATTTGGGGCTGC ATGCGGCGTTCAAGTCGGTCTTTCCGATCGAGAGCTATTCTGGATATGCCGTCCTTGAATATGTGAAGTACCGTCTCGGC GACCCGGTCTTCGACGAGCGCGAGTGTCACCTGCGCGGCGCGACCTTTGCCGCGCCCCTGCGTGTCCTGCTGCGTCTCGT GATCTACGATAAGGAAGCCCCGGCGGGCTCTAGGGTGGTCAAGGACATCCGCGAACAGGAAGTCTACATGGGCGAACTGC CGCTCATGACCGAGACCGGCACCTTCATCATCAACGGCACCGAGCGGGTCATCGTCTCGCAGTTGCACCGTTCGCCGGGT GTCTTTTTCGACCACGACAAGGGCAAGACGCATTCCTCGGGCAAGCTTTTGTTCTCGGCCCGTGTGATTCCCTACCGCGG ATCCTGGCTCGATTTCGAGTTCGATCCCAAGGACAATGTTTTCGTGCGTATCGACCGTCGCCGCAAGCTGCCGGCGACCG TTCTGCTGCGCGCGCTCGGCTATGGCGTCGAAGATATCCTGTCGCGCTTCTTCGAGACCGATACCTTCCGCATTCAGGGC CGCGACGTGACCCTGGATCTGGTGCCCGAGCGTCTGCGCGGCGAGACGGTTGGCTTCGATGTCAAGATCGGCGAGGAGAT TCTGGTGGAAGCCGGGCGTCGCGTGACGGCGCGCCACATCCGCGAACTTCAGAAGTCCGGGGTCGAGCGTTTGGAGGTGC CCGCGGATTTTATGGTCGGGCGGATCCTGGCCCACGCCCAGATCGATACCGAGACCGGCGAGGTGCTGGCCGAGGCCAAT TCCGTGGTGACGCCGGAGTTGCTGGAGACCCTGTTGCAGAAGGGCACCGAGACCCTCGAAACCCTGTTCGTCAACGATCT CGATCAGGGGCCTTATCTGTCGGAAACCCTGCGCATCGATCCCACCACCAGCGATCTGGAGGCGCAGGTCGAAATCTATC GAATGATGCGTCCCGGCGAGCCGCCCACCAAGGAAGCCGCGCAGAATCTCTTTCATAATTTGTTCTTTACCCCGGATCGC TATGATCTCTCCGCCGTCGGGCGGATGAAGTTCAACCGCCGGCTCGGGCGACCCGCCGAAACGGGGCCGGGCGTGATCTA CGACGGTCGTTATTTCATGGGCCGCAACGACGAGTTTTCCAAGAAACTCGTCGCCGAGCATGGCGAGACCTCGGACATCA TCGAGGCGCTGAAGGTGCTGGTCGAACTGCGCAACGGACGCGGCACGGTGGACGATATCGACCACTTGGGCAACCGCCGT ATCCGCTGCGTCGGCGAGATGGCCGAGAATCAGTTCCGCGTCGGTCTGGTGCGAGTGGAACGCGCCGTGAAAGAGCGTCT GTCGCTGGCCGAATCCGAGGGCCTGATGCCCCAGGAACTGATCAATGCCAAGCCGGTGTCGGCGGCGATCAAGGAGTTCT TCGGTTCCAGCCAGTTGTCGCAGTTCATGGATCAGAACAATCCGCTGTCCGAAGTCACGCACAAACGCCGTGTTTCGGCG CTCGGCCCAGGCGGTCTGGCGCGCGAGCGCGCCGGCTTCGAGGTGCGCGACGTGCACCCGACGCATTACGGCCGTGTCTG TCCGATCGAGACGCCGGAAGGTCCGAACATCGGTTTGATCAACTCGCTGGCCGTCTATGCGCGGACCAATTCCTACGGCT TTCTCGAAACCCCTTACATCAAGGTCGAAGCCGGTCAGGTCACCAAGGAGATCAATTATCTGTCCGCGATCGAGGAGGGC AATTTCGTCATCGCCCAGGCCAATGCGACGTTAGACGAGGAGGGGCGTCTCATGGACGCGCTGGTCTCCTGCCGACATGC CAACGAGTTTGCGATGCGGGTGCCGGAGGAAGTTCAGTACATGGACGTGTCGCCGCGCCAGATCGTTTCGGTGGCGGCAT CGCTGATTCCCTTCCTGGAGCACGACGACGCCAACCGGGCGCTGATGGGCTCGAACATGCAACGTCAGGCGGTTCCGACG CTACGGGTCGAGAAGCCGCTGGTCGGCACCGGGATGGAACGCGTGGTGGCGAAGGACTCGGGCGTCTGCGTGGTGGCGCG CCGGGGCGGCGTCATCGAGTCGGTGGACGCCGCGCGCATCGTGGTGCGCGTCAATGATGACGAGGCCGTTCCTGGCGTGC CGGGCGTCGATATCTACAACCTGACCAAGTACACGCGCTCGAATCAGAATACCTGTATCAATCAGCACCCGTTGGTCAAG CCGGGCAATATCGTGGCGCGCGACGACGTGCTGGCCGACGGGCCGTCGACCGACATGGGCGAGCTGGCGCTGGGACAGAA CCTGCGTATCGCCTTCATGCCCTGGAACGGCTACAACTTCGAGGACTCCATCCTCATCTCCGAGCGCGTGGTGCAGGAAG ACCGCTTCACCAGCATCCACATCGAGGAACTTTCCTGTCTGGCCCGCGACACCAAGCTGGGGCCGGAAGAGATCACCGGC GATATTCCCAACGTGGGCGAGTCGGCCCTATCCAAGCTCGACGAATCCGGCATCGTCTATGTCGGCGCCGAGGTGCGCGA CGGCGACATCCTGGTCGGCAAGGTCACGCCCAAGGGCGAGACGCAGCTGACGCCGGAAGAGAAGCTGCTGCGTGCCATCT TTGGCGAAAAGGCGTCGGACGTGAAGGATACCTCGCTGCGTCTGCCGTCCGGCATGAACGGCACGGTCGTCGACGTGCAG GTCTTTACCCGCGACGGTGTGGAGAAGGATAAGCGCGCGATCCAGATCGAGGAGCTGGAACTGGATCGGGTCCGCAAGGA TTTCGCCGATCAGCAGCGCATTATGGAAAACGATACCTTCCAGCGCGTGGAAAAGATGCTGGTCGGCAAGGCCGCCGACG GCGGTCCGGGAAGTCTCAAGCCGGGCTCCAAGGTGACCAAAGCCTATCTCCAGGGGTTGTTGGAGAAGGGTTCGCGCGAT CAGTGGTTCGAGATCCGCATGCAGGAGGAGGAGATCGCCACCCAGCTCGAGGCGATTGCCGCCCAGGTCAAGCAGCAGCG CGATGAATTCCGCGAGCGTTACGAGGTCAAAAAACGCAAGGTGGCGAGCGGAGACGATCTGGCACCCGGCGTGCTCAAGA TGGTCAAGGTATATGTGGCGCTGAAGCGGCGCATTCAGCCGGGCGACAAGATGGCTGGCCGTCACGGCAATAAGGGCGTC ATTTCCAAGGTGGTGCCGGTGGAGGACATGCCCTTCTCGGCCGATGGCGTCCCGGTGGATATCGTGCTCAACCCGCTTGG CGTCCCTTCCCGAATGAACGTGGGACAGGTGCTGGAGACCCATCTGGGTTGGGCGGCAAATGGGCTCGGGGTCAAGATCG AGCGGATGCTGCAGGCGCAGACTGCGGTCGCCGAACTACGCGATTTCCTGGAAAAAGTCTATAACCGCAGCGGTAAGTCG GAGGATCTTGCGAGTTTCTCGGATGACGAGATTCTGGAGCTGGCGCGCAATCTGACCCGCGGCGTACCCATGGCCACGCC GGTCTTCGATGGCGCGACCGAGGAAGAGATCCACGCGATGCTCCAACTCGCCGATCGCGACAATTCCGCGCTGGGGATCC CGAGCGGTCAGACCATCCTCTTCGATGGCCGCACCGGGGACCAGTTCGAGCGTCCGGTGACCGTCGGCTATATGTACATC ATCAAGCTCAACCATCTGGTCGACGACAAGATGCACGCCCGTTCCACCGGCCCTTACAGTCTGGTCACCCAACAACCGTT GGGCGGCAAGGCGCAGTTCGGCGGTCAGCGATTCGGTGAGATGGAGGTCTGGGCGCTGGAAGCCTATGGCGCGGCTTACA CGCTGCAGGAGATGCTCACGGTGAAATCCGACGACGTCAACGGTCGCACCAAGATGTACAAGAACATCGTGGATGGGGAC CATCGGATGGAGGCCGGCATGCCGGAGTCCTTCAACGTGCTCGTCAAGGAGATTCGTTCGCTCGCCATCAACATCGAGCT TCAGCAGGATTGA Protein sequence : MAYSFTEKKRIRKDFGKRPSILGVPFLLATQIDSYREFLQANSSVKDRRDLGLHAAFKSVFPIESYSGYAVLEYVKYRLG DPVFDERECHLRGATFAAPLRVLLRLVIYDKEAPAGSRVVKDIREQEVYMGELPLMTETGTFIINGTERVIVSQLHRSPG VFFDHDKGKTHSSGKLLFSARVIPYRGSWLDFEFDPKDNVFVRIDRRRKLPATVLLRALGYGVEDILSRFFETDTFRIQG RDVTLDLVPERLRGETVGFDVKIGEEILVEAGRRVTARHIRELQKSGVERLEVPADFMVGRILAHAQIDTETGEVLAEAN SVVTPELLETLLQKGTETLETLFVNDLDQGPYLSETLRIDPTTSDLEAQVEIYRMMRPGEPPTKEAAQNLFHNLFFTPDR YDLSAVGRMKFNRRLGRPAETGPGVIYDGRYFMGRNDEFSKKLVAEHGETSDIIEALKVLVELRNGRGTVDDIDHLGNRR IRCVGEMAENQFRVGLVRVERAVKERLSLAESEGLMPQELINAKPVSAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSA LGPGGLARERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNSYGFLETPYIKVEAGQVTKEINYLSAIEEG NFVIAQANATLDEEGRLMDALVSCRHANEFAMRVPEEVQYMDVSPRQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPT LRVEKPLVGTGMERVVAKDSGVCVVARRGGVIESVDAARIVVRVNDDEAVPGVPGVDIYNLTKYTRSNQNTCINQHPLVK PGNIVARDDVLADGPSTDMGELALGQNLRIAFMPWNGYNFEDSILISERVVQEDRFTSIHIEELSCLARDTKLGPEEITG DIPNVGESALSKLDESGIVYVGAEVRDGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRLPSGMNGTVVDVQ VFTRDGVEKDKRAIQIEELELDRVRKDFADQQRIMENDTFQRVEKMLVGKAADGGPGSLKPGSKVTKAYLQGLLEKGSRD QWFEIRMQEEEIATQLEAIAAQVKQQRDEFRERYEVKKRKVASGDDLAPGVLKMVKVYVALKRRIQPGDKMAGRHGNKGV ISKVVPVEDMPFSADGVPVDIVLNPLGVPSRMNVGQVLETHLGWAANGLGVKIERMLQAQTAVAELRDFLEKVYNRSGKS EDLASFSDDEILELARNLTRGVPMATPVFDGATEEEIHAMLQLADRDNSALGIPSGQTILFDGRTGDQFERPVTVGYMYI IKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGD HRMEAGMPESFNVLVKEIRSLAINIELQQD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 69 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Thivi_4194 | YP_006416132.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| Thivi_4194 | YP_006416132.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 70 |
| Thivi_4194 | YP_006416132.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 69 |
| Thivi_4194 | YP_006416132.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 69 |
| Thivi_4194 | YP_006416132.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 69 |
| Thivi_4194 | YP_006416132.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 69 |
| Thivi_4194 | YP_006416132.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 69 |
| Thivi_4194 | YP_006416132.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 69 |
| Thivi_4194 | YP_006416132.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 69 |
| Thivi_4194 | YP_006416132.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 69 |
| Thivi_4194 | YP_006416132.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 69 |
| Thivi_4194 | YP_006416132.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 69 |
| Thivi_4194 | YP_006416132.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 69 |
| Thivi_4194 | YP_006416132.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 68 |
| Thivi_4194 | YP_006416132.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 68 |
| Thivi_4194 | YP_006416132.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 67 |
| Thivi_4194 | YP_006416132.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 66 |
