Gene Information

Name : Aeqsu_2012 (Aeqsu_2012)
Accession : YP_006418493.1
Strain : Aequorivita sublithincola DSM 14238
Genome accession: NC_018013
Putative virulence/resistance : Unknown
Product : DNA-directed RNA polymerase subunit beta
Function : -
COG functional category : -
COG ID : -
EC number : 2.7.7.6
Position : 2155817 - 2159629 bp
Length : 3813 bp
Strand : +
Note : PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subuni

DNA sequence : 
ATGTCAGCAACGCAAACTGAAAGATTGAATTTTTCCTCTGTAAAAAATAAGCCGGACTATCCCGACTTTTTGGACATTCA
GATTAAATCCTTTCAGGATTTTTTCCAGTTGGAAACCAAATCAGAAGAAAGAGGCCAAGAAGGTTTATACAAAACCTTTT
TGGAAAATTTCCCGATAACCGATACTCGCAACCAATTCGTTTTAGAGTTTTTAGACTATTTCGTAGATCCCCCAAGATAT
TCCATTCAGGAATGTATTGAACGCGGTCTAACCTATAGCGTACCTCTAAAAGCACGGTTGAAACTGTACTGTACAGACGC
AGAACACGAAGATTTTGAAACCATAGTTCAGGATGTTTACTTAGGTACTATTCCATACATGACCCCGAGCGGAACTTTCT
GCATCAATGGGGCCGAGCGTGTTGTTGTTTCTCAACTTCACCGTTCGCCAGGTGTATTCTTTGGCCAGTCTTTCCATGCA
AATGGAACAAAGCTATATTCTGCCCGTGTAATTCCTTTTAAAGGTTCATGGATTGAATTCGCCACAGATATCAACAGCGT
AATGTACGCCTACATTGACCGTAAGAAAAAGTTACCGGTTACCACACTTTTCCGTGCTATCGGTTTCGAAAGAGATAAAG
ATATTCTTGAAATATTTGACCTTGCGGAAGAAGTGAAAGCTTCAAAAACAGGACTTAAAAAATACATTGGTCGTAAACTT
GCCGCTCGTGTGCTAAAAACTTGGCACGAGGATTTCGTAGATGAAGATACAGGCGAGGTTGTTTCCATTGAACGTAATGA
GATTATTTTAGACCGTGATACCGTTCTTGAAAAGGAACACATTGATGAAATACTCGATTCTGGAGCTAAAACAATTTTAT
TGCACAAAGAGGATAACCTTTTGGCAGATTACGCCATTATCCACAATACCTTACAAAAAGATCCTACCAACTCTGAAAAA
GAAGCGGTAGAACATATATATAGACAACTTCGTAACGCTGAACCGCCAGATGAGGAAACTGCTCGTGGAATTATCCACAA
ACTTTTCTTTAGCGACCAAAGATATAATCTTGGGGAAGTAGGGCGTTACAGAATGAACAAAAAACTGGGTCTTGATATCG
CTATGGACAAGCAAGTGCTTACCAAAGAAGATATCATTACTATAGTTAAATACTTAATCGAGCTTATCAACTCTAAAGCT
GAAATTGATGATATTGACCACTTATCTAACCGTCGTGTACGTACTGTAGGTGAGCAATTATCACAACAATTTGGTGTTGG
TCTTGCACGTATGGCGCGTACCATTCGCGAACGTATGAACGTTCGTGACAACGAGGTGTTTACACCTATTGATTTGATTA
ATGCGAAGACTTTGTCTTCTGTAATTAACTCATTCTTTGGTACTAACCAACTTTCACAATTTATGGATCAAACTAACCCG
TTGGCAGAGATTACGCACAAGCGTCGTCTTTCTGCACTAGGGCCAGGAGGTCTATCTCGTGAAAGAGCAGGTTTCGAAGT
TCGTGACGTTCATTATACGCACTACGGTCGTCTTTGCCCGATTGAAACTCCTGAAGGGCCAAACATTGGTTTGATTTCTT
CTCTTGCAGTTTTTGCGAAGGTGAACAATCTTGGGTTTATTGAAACGCCATATCGAAAAGTGACAGATGGAAAAGTTGAC
TTCAAAAATGAACCTATCTATCTTTCTGCAGAAGAGGAAGAAGATATGCACATTGCACAAGCTAACATTCCATTGACGGA
TAAAGGGGTTATAGATACAGATAAGGTTATTGCTCGTATGGAAGGTGACTTCCCACTAGTAGACCCAACTGTTTTGCATT
ATGCAGATGTTGCGCCAAACCAGATTGCATCAATTTCTGCATCGTTAATTCCTTTCTTGGAACACGATGATGCAAACCGT
GCACTGATGGGATCAAACATGATGCGTCAGGCAGTACCGTTAATGATTTCTGATTCTCCAATCGTTGGAACTGGTCTTGA
AAGACAAGTTGCTTCAGATTCACGTGTTTTGATAAATGCCGAAGGAGATGGTGTGGTAGAATATGTTGATGCAAACGAAA
TCACTATTAAATATGACCGTACCGATGAGCAGCGTATGGTTAGTTTTGATGCTGACGAAAAAACATACCAACTTGTAAAA
TTCAGAAAAACCAACCAAGGTACTTCCATTAACTTGAAGCCTATTGTTAGCAAAGGCGATAGAGTGAAAAAAGGACAAGT
ACTTTGTCAAGGTTACGCTACTGAAAAAGGAGAACTTGCACTTGGACGAAACATGAAGGTTGCCTTCATGCCTTGGAAAG
GTTACAACTTTGAGGATGCAATCGTTATTTCTGAAAGAGTAGTTCGTGAAGATATTTTCACTTCTATACATATTGATGAG
TATTCATTGGAAGTTCGAGATACCAAATTGGGTAACGAAGAATTAACAAATGATATTCCAAACGTTTCAGAAGAAGCTAC
TAAAGATTTAGATGAAGCGGGTATGATTCGTATAGGAGCAGAGGTAAAACCTGGCGATATCCTTATCGGAAAAATTACTC
CAAAAGGAGAAAGCGATCCAACACCTGAAGAAAAACTTCTTCGCGCTATTTTTGGAGACAAAGCTGGTGATGTGAAAGAT
GCTTCCCTTAAAGCTTCACCATCATTACATGGTGTTGTAATTGAGAAAAAGTTGTTTGCTCGCGCCGTAAAAGACAAACG
CAAACGTGCTAAAGACAAAGAAGACATCGCAGAACTTGAAGCAAAATACTATGCTAAGTTTGATGAACTTCAAGATGTTT
TGGTTGAAAAACTTTTCACAATTGTTGGAGGTAAAACTGCACAAGGAATCAATAATGATCTTGGTGAAATAGTATTTCCA
AAAGGTAAAAAGTTCACATTAAAAATGCTTCACGCTGTTGACGATTACACTCACTTAACTGGGGGTGTTTGGACAACGGA
TGATGAAACCAACGTGTTGGTTGCAGATTTAATGCACAACTATAAAATTAAGGAAAACGACCTTCAAGGTAACTTGCGTC
GTGAGAAGTTTACAATCTCTGTTGGAGATGAACTTCCATCCGGAATTTTGAAACTTGCTAAAGTTTACATCGCTAAAAAG
CGTAAACTAAAAGTAGGAGACAAGATGGCGGGACGTCACGGAAACAAAGGTATTGTTGCACGTATTGTACGTGAAGAAGA
TATGCCTTTCCTTGAAGATGGAACTCCTGTAGATATCGTGCTGAACCCACTTGGGGTACCATCGCGTATGAACATTGGGC
AAATTTATGAAACCGTTCTTGGATGGGCTGGACAAAAATTAGGTCGCAAATATGCAACCCCAATTTTTGATGGTGCAACG
ATAGACCAGATAAATGAATTGACTGATGAAGCTGGAATTCCAAGATTTGGACATACCTATCTATTTGACGGTGGAACTGG
TAAGCGTTTTGATCAACCTGCAACCGTAGGTATAATCTATATGCTGAAACTAGGCCACATGGTAGATGATAAAATGCACG
CACGTTCCATAGGACCTTACTCACTTATTACACAACAGCCTCTTGGTGGTAAAGCACAATTTGGTGGTCAGCGTTTTGGA
GAGATGGAAGTTTGGGCCTTGGAAGCTTATGGTGCATCCAGCACGCTTAGAGAAATATTGACTGTTAAATCTGATGATGT
TATTGGAAGGGCGAAAACCTACGAAGCAATCGTAAAAGGTGAAACCATGCCAGAACCAGGATTACCAGAATCTTTCAACG
TACTTATGCACGAATTGAAAGGATTGGGTCTTGACATTAGATTAGAGGAATAA

Protein sequence : 
MSATQTERLNFSSVKNKPDYPDFLDIQIKSFQDFFQLETKSEERGQEGLYKTFLENFPITDTRNQFVLEFLDYFVDPPRY
SIQECIERGLTYSVPLKARLKLYCTDAEHEDFETIVQDVYLGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSFHA
NGTKLYSARVIPFKGSWIEFATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKASKTGLKKYIGRKL
AARVLKTWHEDFVDEDTGEVVSIERNEIILDRDTVLEKEHIDEILDSGAKTILLHKEDNLLADYAIIHNTLQKDPTNSEK
EAVEHIYRQLRNAEPPDEETARGIIHKLFFSDQRYNLGEVGRYRMNKKLGLDIAMDKQVLTKEDIITIVKYLIELINSKA
EIDDIDHLSNRRVRTVGEQLSQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVFAKVNNLGFIETPYRKVTDGKVD
FKNEPIYLSAEEEEDMHIAQANIPLTDKGVIDTDKVIARMEGDFPLVDPTVLHYADVAPNQIASISASLIPFLEHDDANR
ALMGSNMMRQAVPLMISDSPIVGTGLERQVASDSRVLINAEGDGVVEYVDANEITIKYDRTDEQRMVSFDADEKTYQLVK
FRKTNQGTSINLKPIVSKGDRVKKGQVLCQGYATEKGELALGRNMKVAFMPWKGYNFEDAIVISERVVREDIFTSIHIDE
YSLEVRDTKLGNEELTNDIPNVSEEATKDLDEAGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKD
ASLKASPSLHGVVIEKKLFARAVKDKRKRAKDKEDIAELEAKYYAKFDELQDVLVEKLFTIVGGKTAQGINNDLGEIVFP
KGKKFTLKMLHAVDDYTHLTGGVWTTDDETNVLVADLMHNYKIKENDLQGNLRREKFTISVGDELPSGILKLAKVYIAKK
RKLKVGDKMAGRHGNKGIVARIVREEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGQKLGRKYATPIFDGAT
IDQINELTDEAGIPRFGHTYLFDGGTGKRFDQPATVGIIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYEAIVKGETMPEPGLPESFNVLMHELKGLGLDIRLEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00346 YP_008207811.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR25 Protein 0.0 45
BJAB0868_00350 YP_008211676.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR26 Protein 0.0 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta CP001138.1.gene4362. Protein 0.0 46
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta CP000034.1.gene3741. Protein 0.0 46
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_002695.1.914942.p Protein 0.0 46
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_009085.4918494.p0 Protein 0.0 46
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_002516.2.881699.p Protein 0.0 46
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta CP000675.2.gene392.p Protein 0.0 46
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta CP001918.1.gene250.p Protein 0.0 46
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta CP002695.1.gene18.p0 Protein 0.0 45
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_010400.5987325.p0 Protein 0.0 45
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_010611.6233925.p0 Protein 0.0 45
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_011595.7060572.p0 Protein 0.0 45
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_010410.6003841.p0 Protein 0.0 45
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_011586.7046027.p0 Protein 0.0 45
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_011035.1.6448762. Protein 0.0 45
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta CP004022.1.gene2794. Protein 0.0 45
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta CP000647.1.gene4402. Protein 0.0 45
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_008702.1.4609796. Protein 0.0 44
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_009782.5559150.p0 Protein 6e-173 43
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_002758.1120515.p0 Protein 7e-172 43
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_002953.2862188.p0 Protein 6e-173 43
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_002952.2860169.p0 Protein 9e-173 43
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_007793.3914836.p0 Protein 6e-173 43
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_003923.1002608.p0 Protein 6e-173 43
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_013450.8613267.p0 Protein 6e-173 43
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_009641.5330265.p0 Protein 6e-173 43
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_010079.5776819.p0 Protein 6e-173 43
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_002951.3236234.p0 Protein 1e-172 43
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_007622.3792928.p0 Protein 6e-173 43
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_002745.1123305.p0 Protein 6e-173 43
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_007795.3920377.p0 Protein 6e-173 43
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_009632.5315067.p0 Protein 6e-173 43
Aeqsu_2012 YP_006418493.1 DNA-directed RNA polymerase subunit beta NC_009487.5169226.p0 Protein 1e-171 42