Gene Information

Name : PADK2_12905 (PADK2_12905)
Accession : YP_006482564.1
Strain : Pseudomonas aeruginosa DK2
Genome accession: NC_018080
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2731305 - 2731823 bp
Length : 519 bp
Strand : +
Note : COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

DNA sequence :

ATGTCCGCCCCGATCCTTCTCAGCGCCCACCATCGCGCCATGCATGCGCTGTACAGCGAGCACCATGGCTGGTTGCAGAA
CTGGCTGCGCGGCAAGCTGGGCTGCGCGGCGGACGCGGCGGACCTGGCCCAGGACACCTTCCTGCGCATCCTGCTCAAGC
GCGAACTGCGCGAGATCGGCATGCCGCGCGCGTTCCTGCGGACCATCGCCCGCGGCCTGGTGATCGACCACTGGCGTCGC
GAGGAACTGCAGCGCGCCTACCTCGAAAGCATCGCCCACCTGCCCGAGGCACAGGCGCCGTCGCCCGAGGCGCGGGAACT
GGTGCTGGAACTGCTGGAGGAAATCTCGCGGATGCTCGACGGGCTCAAGCCGAAGGTCCGCACCGCCTTCCTCCTGGCCC
AGTGCGAAGACCTCAGCCACCGGCAGATCGCCGAACGCATGGGGGTTTCCCAGCGTAGCGTCGAGCGCTACGTGGCCGAG
GCGCTGTACCACTGCTACCTGCTGCGCTACGGCGAATGA

Protein sequence :

MSAPILLSAHHRAMHALYSEHHGWLQNWLRGKLGCAADAADLAQDTFLRILLKRELREIGMPRAFLRTIARGLVIDHWRR
EELQRAYLESIAHLPEAQAPSPEARELVLELLEEISRMLDGLKPKVRTAFLLAQCEDLSHRQIAERMGVSQRSVERYVAE
ALYHCYLLRYGE

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	1e-29	51

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PADK2_12905	YP_006482564.1	RNA polymerase sigma factor	VFG1049	Protein	4e-30	51