Gene Information

Name : PADK2_25970 (PADK2_25970)
Accession : YP_006485159.1
Strain : Pseudomonas aeruginosa DK2
Genome accession: NC_018080
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5590732 - 5591268 bp
Length : 537 bp
Strand : -
Note : COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

DNA sequence :

ATGAATGCGCCGAGTTCCTGCCTGTCCGCGGACCGCGACGGCGTCGCCACGCTCTACCGTGAAAACCATGCCTGGCTGCG
CAACTGGCTGGCCTACCGACTCCGCTCCTGGGGACGCGGCGTGGCCGACGACCTGGCCCATGACACCTTCCTGCGCATTC
TCGCCAGCCGCGACGGCGGCCAGCGTGAAGCGATCCGTCAGCCGCGCGCCTATCTCACCCGTATCGCCAACTGCGTGCTG
GTCAGTTGGCGCCGTCGCCAATCGCTGGAACTTGCCTGGCTGGAGGCCCTGGCCACGCTGCCCGAGCCGTTGCAGCCGTC
GCCGGAACAACAGAGCGTGATCGTCGAGACCCTGCACGAGATCGACGCGCTGCTCGATACCCTGCGCCCGCGGGTGAAAC
AGGCATTCCTGATGGCGACGCTGGACGGCATGAAGCAGAAGGACATCGCCCAGGCGCTGGGCGTCGCGCTGCCGACGGTG
AAGAAGTTCATCCACCAGGCCTACGTGACCTGCCTGAGCCTGATGCCCGATGAATGA

Protein sequence :

MNAPSSCLSADRDGVATLYRENHAWLRNWLAYRLRSWGRGVADDLAHDTFLRILASRDGGQREAIRQPRAYLTRIANCVL
VSWRRRQSLELAWLEALATLPEPLQPSPEQQSVIVETLHEIDALLDTLRPRVKQAFLMATLDGMKQKDIAQALGVALPTV
KKFIHQAYVTCLSLMPDE

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	9e-19	43

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PADK2_25970	YP_006485159.1	RNA polymerase sigma factor	VFG1049	Protein	4e-19	43