Gene Information

Name : PADK2_04830 (PADK2_04830)
Accession : YP_006480961.1
Strain : Pseudomonas aeruginosa DK2
Genome accession: NC_018080
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1043078 - 1043587 bp
Length : 510 bp
Strand : -
Note : COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

DNA sequence : 
GTGTCGAGCGCCGACCTCGCCCATGCGGCCGCGTTGCATACCCTCTACAGCGACCACCACCACTGGCTCACGGGCTGGCT
GCGGCGCCGCCTCGGCTGCCCGCAGAACGCCGCCGACCTGGCCCAGGACACCTTCGTCAAGGTCCTGGTTTCGCGCCAGG
CCGCGCGCATCGACGAACCGCGCGCCTTCCTCACCACCATCGCCCGCCGCGTGCTGTGCAACCACTACCGCCGCCAGGAC
GTCGAGCGCGCCTACCTGGAAGCCCTGGCCAGCCTGCCCGAGCGGGAAGTCCCCAGCGAAGAGACCCGCGCCATCGTCCT
GGAGACCCTGGTCGAGCTGGACCGTCTGCTCGACGGTCTGCCGCCGCTGGCCAAGGAGACCTTCCTGCTGGCCCAGCTCG
ACGGCCTGGGCTACGCCGAGATCGCCACGCAGCTGGGCATCTCCCTGAGCAGCGTCAAGCGCTACATGCTCAAGGCTGCG
CAACGCTGCTACTTCGCCGAGCTGCCATGA

Protein sequence : 
MSSADLAHAAALHTLYSDHHHWLTGWLRRRLGCPQNAADLAQDTFVKVLVSRQAARIDEPRAFLTTIARRVLCNHYRRQD
VERAYLEALASLPEREVPSEETRAIVLETLVELDRLLDGLPPLAKETFLLAQLDGLGYAEIATQLGISLSSVKRYMLKAA
QRCYFAELP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 8e-37 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PADK2_04830 YP_006480961.1 RNA polymerase sigma factor VFG1049 Protein 3e-37 53