Gene Information

Name : rpoB (KUI_1589)
Accession : YP_006503238.1
Strain : Taylorella equigenitalis ATCC 35865
Genome accession: NC_018108
Putative virulence/resistance : Unknown
Product : DNA-directed RNA polymerase subunit beta
Function : -
COG functional category : -
COG ID : -
EC number : 2.7.7.6
Position : 1713855 - 1717967 bp
Length : 4113 bp
Strand : -
Note : -

DNA sequence : 
ATGCCTTACTCGTTTACTGAAAAGAAACGTATCCGCAAAAATTTTGCGAAACGTCAAGTTGTTCAAGACGTTCCATACCT
TTTAGAAACACAAATTCAATCATATCGCAGCTTTTTACAGAAAGACCTTACACCTTCAAAAAGAGCTGACATAGGTCTTC
AAGCTGCTTTTAATTCAATTTTCCCTATCGAGAGTAATAATGGCTCTGCGAGACTTGAGTTCGTCAGTTATGTACTTAAG
GAGCCTCAGTTTGATGTTAAAGAGTGTCAGCTTCGTGGGCTTACATACTATTCTGGACTTTATGCGAAAGTACGCCTTGA
AATTCTTGATAGAGAAGCAAGCAAACCAACTGTCAAAGAAGTAAAAGAAGAAGAAGTCTATATGGGGGATTTGCCTCTAA
TGACTGACAATGGTTCGTTTATTATTAACGGTACTGAACGTGTAATCGTGTCACAGTTGCACAGATCGCCTGGTGTATTT
TTTGAGCATGATAAAGGTAAAAACCATAGCTCAAACAAATTACTTTTTTCAGCACGTGTTATCCCTTACCGTGGATCATG
GCTTGATTTTGAGTTTGATCACAAAGATTACTTGTACTTCCGTATCGACCGTCGTCGTAAGATGCCAGTAACTATCCTAC
TTAAAGCCATAGGAATGAGCAGTGACGAAATTTTGGGGACTTTCTTTGAGTTTTCAAAATATGATCTTAATGATGATGGT
GCCGTATTACATTTTGTTCCTGAGCGACTTAAAGGTGAAGTTGCTCGCTTTGATATTGTAGATAAAAAGGGCAATGTAAT
CGTACAAAAAGACAAACGTATTAACTCTAAAAATATACGTGATATCGCTGCGGCTAAATTAACAAAATTGCCTGTACCTG
ATGATTATTTGGTGGGACAAACCATTGCCAAAACAATTATCGATGAAGAAACAGGTGAGGTTTTAGTTCAAGCTAATACT
GAAATTACTGAGTCTGTTTTAGCTCAATTGCGCAAGTCTTCAATTAAAGAGATTGAGACGCTTTACACAAATGAGCTTGA
TCATGGTGCTTATATATCTGCTACACTAGCCATTGATGAGACTCTTGACCAAACGGCTGCTCGTAAATCTATTTATAAGA
TGATGCGTCCAGGCGAATTGCCTGCTGATGACGCCGTTGAGTCATTGTTTAACCGTATGTTCTACAACTCAGATACATAT
GATTTATCTACTGTGGGACGTATGAAAGTTAATCGTAGGTTGGGACGCAATTCTGACAAAGGTCCTACTACTTTAACTAA
TGAAGATATTTTAGACACAATCAAAACACTTGTTGATTTGCGTAATGGTCGCGGTGAAATCGATGATATTGACCATTTAG
GAAATCGTCGTGTTCGTTGTGTTGGTGAGCTTGCAGAAAACCAATTTAGATCAGGTCTTGTTCGTGTGGAACGGGCTGTT
AAAGAGCATCTCGGGCATGCAGAGTCTGAGAATTTATTGCCAAATGATTTAATAAATTCAAAACCTATTTCATCTGCGAT
CAAAGAGTTTTTCAGTTCTAACCAGCTTTCTCAGTTCATGGATCAAACTAATCCATTATCTGAAATTACACACAAACGTC
GTGTATCTGCGTTAGGACAAGGCGGGCTAACTCGTGAACGTGCAGGCTTTGAAGTTCGTGACGTGCATCCAACTCACTAT
GGTCGCGTATGCCCGATTGAGACTCCAGAAGGTCCAAATATTGGTCTTATTAACTCGATGGCTCTTTATGCTCGTCAAAA
TGAGTACGGATTTCTTGAGACACCATACCGCAAAGTGGAAAACGGTAAGGTTGTAGATCAAATCGATTATCTATCAGCGA
TTGAAGAGAGTAAGTATGTTATTGCTCAAGCAAACGCAAACTTAGATGAACATGGAAATTTTATTGATGATTTAATTGCG
TGTCGTCAAGCTGGTGAAACTATGCTTATGTCACCAGAGAAAGTAGAATATATTGACGTTGCACCATCTCAAATTGTTTC
GGTTGCAGCTTCACTAATTCCTTTCCTTGAGCATGATGATGCGAACCGTGCACTTATGGGTGCAAACATGCAACGTCAAG
CAGTTCCGTGCCTACGCCCTCAAAAACCACTTGTGGGTACAGGTATCGAGCGTACGGTAGCCGTTGACTCTGGAACTACT
GTTCAAGCACGTCGTGGCGGTGAAGTTGACTATGTCGACTCAGAAAGAATTGTTATTCGCGTAAATGATGATGAAAGCGT
GTCTGGAAGCGTTGGTGTAGATATTTATAATTTAAATAAATACACTCGCTCAAATCAAAATACAAACATCAATCAACGAC
CAATCGTTAAAAAGGGTGATGTTGTACAACGTGGAGATGTGATTGCTGATGGTGCTTCAACTGACTTAGGAGAGCTTGCT
CTTGGTCAGAATATGCTTATAGCTTTCATGCCATGGAATGGATATAACTTTGAGGATTCAATCCTAATTTCTGAAAAAGT
TATTGCAAATGATCGTTACACTTCTGTCCATATCGAAGAACTGTCAGTAGTAGCTCGTGAAACACAGTTGGGTGATGAGG
AAATAACACGCGATATTCCAAATCTTGCTGCAGAACAATTAAACAGGCTTGATGAATCTGGAATCGTACATATTGGTGCT
GAAGTTAGAGCTCGCGATGTGCTAGTAGGAAAGGTTACTCCTAAAGGTGAAACTCAACAAAGTCCTGAAACTAAGCTATT
AAGAGAAATCTTCCAAGATAAGGCACTAGATGTAAAAGACACTTCTTTACGTGTACCATCTGGTATGGTTGGTACAGTCA
TCGATGTACAGGTATTAACTGGTAAAAGAGTTGAACGCGATAAACGTGCACAATCTATTATAGAAGAGGAATTGCGTCGC
TATCGTCAAGACCTTGATTCTCAACTACGCATTGTTGAGAAGGATATGTTTAATCGTCTACGTAAAGTCTTGGTAGGTAA
AAAGGTAAATGGTGGTCCAATTTCACTATCTAAGGGATCTAGTATTACTGAGGAATATTTGAAAAACCTACCAACTTGGG
ATTGGTTTGATATTCGTCCTGTGGATGAAGATGTTGCCATCGTACTTGAACAAGCTAAGGATTCAATCGAGAAGAAACGT
CATGAGTTTGATATCAAATTTGAAGAGAAACAGAAAAAACTAACTCAAGGCGACGAATTACCTCCTGGTGTTCGTAAGAT
GGTTAAAGTGTTCTTAGCAGTTAAACGTCGTTTGCAGCCTGGTGACAAAATGGCGGGACGTCACGGAAACAAAGGTGTTG
TTTCGAGGATATTGCCAGTAGAAGATATGCCTCATATGGCTGACGGTACACCTGCAGATATCGTTTTAAACCCACTGGGC
GTGCCATCCCGTATGAATGTCGGTCAGGTTCTTGAAGTTCATTTAGGTTGGGCCGCAAAAGGTATTGGGCAACGAATCGC
CGATATGCTTGCAGATGAACGTAAAATCCAAGCATCCGAAATTCGTAAGTATCTAGAAAAAGTTTATAACCGTACAGGTA
AAACTGAGGATCTTAAAGAATTTACAGATGAGCAAATTATTGAAATGGCTCACAATCTAAAAGATGGTATTCCTTTTGCT
ACTCCTGTTTTTGATGGGGCAACAGAAGAAGAAATTAACGATATGCTTGAACTTGCTTATCCAGATGACATCAAAGAGAA
ACTTCATCTGACAGATTCTCGTACACAAGCTTATTTAATAGATGGTCGTACGGGTGAGCCTTTTGAGAGACCTGTGACTA
TCGGCTATATGCACTATTTGAAACTACACCACTTAGTGGATGATAAGATGCATGCTCGTTCAACAGGTTCTTACTCACTT
GTTACACAACAGCCATTGGGTGGTAAAGCTCAATTTGGTGGTCAACGTTTCGGTGAGATGGAGGTGTGGGCACTTGAAGC
ATATGGTGCAGCATTCACATTGCAAGAGATGTTGACAGAAAAATCTGACGATATGGAAGGACGCAACAACGTAAATCGTA
ATATTATCCAAGGCGATCACGTAATTGATGCGGGTATGCCAGAGTCGTTCAATGTAATTGTTAAAGAGATCAGGTCACTT
GGTCTCGACATGGAGTTGGAGGGTAAACAGTAA

Protein sequence : 
MPYSFTEKKRIRKNFAKRQVVQDVPYLLETQIQSYRSFLQKDLTPSKRADIGLQAAFNSIFPIESNNGSARLEFVSYVLK
EPQFDVKECQLRGLTYYSGLYAKVRLEILDREASKPTVKEVKEEEVYMGDLPLMTDNGSFIINGTERVIVSQLHRSPGVF
FEHDKGKNHSSNKLLFSARVIPYRGSWLDFEFDHKDYLYFRIDRRRKMPVTILLKAIGMSSDEILGTFFEFSKYDLNDDG
AVLHFVPERLKGEVARFDIVDKKGNVIVQKDKRINSKNIRDIAAAKLTKLPVPDDYLVGQTIAKTIIDEETGEVLVQANT
EITESVLAQLRKSSIKEIETLYTNELDHGAYISATLAIDETLDQTAARKSIYKMMRPGELPADDAVESLFNRMFYNSDTY
DLSTVGRMKVNRRLGRNSDKGPTTLTNEDILDTIKTLVDLRNGRGEIDDIDHLGNRRVRCVGELAENQFRSGLVRVERAV
KEHLGHAESENLLPNDLINSKPISSAIKEFFSSNQLSQFMDQTNPLSEITHKRRVSALGQGGLTRERAGFEVRDVHPTHY
GRVCPIETPEGPNIGLINSMALYARQNEYGFLETPYRKVENGKVVDQIDYLSAIEESKYVIAQANANLDEHGNFIDDLIA
CRQAGETMLMSPEKVEYIDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPQKPLVGTGIERTVAVDSGTT
VQARRGGEVDYVDSERIVIRVNDDESVSGSVGVDIYNLNKYTRSNQNTNINQRPIVKKGDVVQRGDVIADGASTDLGELA
LGQNMLIAFMPWNGYNFEDSILISEKVIANDRYTSVHIEELSVVARETQLGDEEITRDIPNLAAEQLNRLDESGIVHIGA
EVRARDVLVGKVTPKGETQQSPETKLLREIFQDKALDVKDTSLRVPSGMVGTVIDVQVLTGKRVERDKRAQSIIEEELRR
YRQDLDSQLRIVEKDMFNRLRKVLVGKKVNGGPISLSKGSSITEEYLKNLPTWDWFDIRPVDEDVAIVLEQAKDSIEKKR
HEFDIKFEEKQKKLTQGDELPPGVRKMVKVFLAVKRRLQPGDKMAGRHGNKGVVSRILPVEDMPHMADGTPADIVLNPLG
VPSRMNVGQVLEVHLGWAAKGIGQRIADMLADERKIQASEIRKYLEKVYNRTGKTEDLKEFTDEQIIEMAHNLKDGIPFA
TPVFDGATEEEINDMLELAYPDDIKEKLHLTDSRTQAYLIDGRTGEPFERPVTIGYMHYLKLHHLVDDKMHARSTGSYSL
VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQEMLTEKSDDMEGRNNVNRNIIQGDHVIDAGMPESFNVIVKEIRSL
GLDMELEGKQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00346 YP_008207811.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR25 Protein 0.0 63
BJAB0868_00350 YP_008211676.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR26 Protein 0.0 63

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta CP002695.1.gene18.p0 Protein 0.0 78
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_008702.1.4609796. Protein 0.0 71
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_011035.1.6448762. Protein 0.0 71
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_002516.2.881699.p Protein 0.0 65
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta CP000675.2.gene392.p Protein 0.0 64
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_009085.4918494.p0 Protein 0.0 63
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_010611.6233925.p0 Protein 0.0 63
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_011595.7060572.p0 Protein 0.0 63
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_010410.6003841.p0 Protein 0.0 63
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_011586.7046027.p0 Protein 0.0 63
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_010400.5987325.p0 Protein 0.0 63
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta CP001138.1.gene4362. Protein 0.0 62
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta CP001918.1.gene250.p Protein 0.0 62
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_002695.1.914942.p Protein 0.0 62
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta CP000034.1.gene3741. Protein 0.0 62
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta CP004022.1.gene2794. Protein 0.0 62
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta CP000647.1.gene4402. Protein 0.0 62
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_009782.5559150.p0 Protein 0.0 45
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_009487.5169226.p0 Protein 0.0 45
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_002953.2862188.p0 Protein 0.0 45
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_013450.8613267.p0 Protein 0.0 45
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_007793.3914836.p0 Protein 0.0 45
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_003923.1002608.p0 Protein 0.0 45
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_002952.2860169.p0 Protein 0.0 45
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_009641.5330265.p0 Protein 0.0 45
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_002951.3236234.p0 Protein 0.0 45
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_010079.5776819.p0 Protein 0.0 45
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_002758.1120515.p0 Protein 0.0 45
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_007622.3792928.p0 Protein 0.0 45
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_002745.1123305.p0 Protein 0.0 45
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_007795.3920377.p0 Protein 0.0 45
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta NC_009632.5315067.p0 Protein 0.0 45
rpoB YP_006503238.1 DNA-directed RNA polymerase subunit beta AM180355.1.gene120.p Protein 1e-180 45