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Name : rpoB (LPO_0372) Accession : YP_006504428.1 Strain : Legionella pneumophila Lorraine Genome accession: NC_018139 Putative virulence/resistance : Unknown Product : RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 393525 - 397631 bp Length : 4107 bp Strand : + Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2068078, 377281, 6266829, 7011900, 91071589, 92316970, 93094280, 9893021, 99255760; Product type e : enzyme DNA sequence : ATGGCAGTTGCAGAAGCTAAACCTCAATATTCGCATGCTGAGAAAAAACGATTTCGCAAAAGCTTTGGTAAGCAGACAGA TATAATGCCAATACCGAATCTGCTTGAAATTCAACTTAAATCCTACAGGGATTTTCTTCAAACTGATACTAAATTAAGCG AACAACTGAATACGGGATTGCATGCTGCATTTTCTTCTGTATTTCCTATCGAAAGCTTTTCTGGTAATGCAAGACTTGAA TACGTCGGATACAAGCTTGGAGAGCCTGCATTTGATGTTCGCGAATGCAAACTACGAGGGCTAACTTACTCAGCTCCTCT AAGAGTCAAGATCAGACTCGTTGTGCTTGATAAAGATGCAAGCGATGATCCTAAGCCTATAAAGGATATTAGAGAGCAAG ATGTTTTTATGGGGGAAATTCCCCTAATGACCGATGTTGGTACGTTTGTGGTCAATGGAACTGAACGTGTTGTTGTTTCA CAATTACATCGTTCGCCTGGAGTTATATTTGAACATGACAAGGGAAAAACTCACTCTTCAGGTAAATTGCTCTATTCCGC ACGAATAATACCTTATCGTGGTTCATGGTTAGATTTTGAATTCGATCCTAAAGATTGCGTTTATGTACGTATTGACAGAC GTCGAAAACTGCCAGTGACTATTTTGCTCAGAGCATTGGGCTACGAAGCAGAAGATATATTAAGCGAATTTTTTGAAACA ACTCGTTGTCATCTAAAAAATGGCGAATACCATATCGATTTAATTCCACAGCGTTTGCGTGGTGAAATCGCCTCATTCGA CATTCATGTTCCTGAGACAGGAGAGCTTATCGTAGAGCAAGGTCGTCGAATTACTGCAAGACATATAAAGCAAATGGAAA AAAGCCAAATGCAGGATCTTGTGGTGCCAAGAGACTATTTAATTGGAAAAACATTAGCAAAAAATATTATTGATACCTCA ACCGGTGAATTTCTGGCTCAAGCGAATGATGAGATAACGGAAGAACTTTTAGATGCTATGGCTAACCATGGTATTTTACA AATTGATATGATCTATACTAATGATTTGGATCATGGATCTTACATATCGGATACATTAAAAATTGATCCCACAGGATCAC AACTAGAAGCGCTCGTTGAAATTTACCGCATGATGCGCCCTGGAGAGCCTCCTACAAAAGAAGCTGCTGAGGCACTATTC AAAAATCTATTCTTTGTTGAAGAAAGATATGATCTATCTGCTGTTGGCAGAATGAAATTTAATCGTCGCGTAGGAATTAA GAGTGACGAAGGCCCAGGCACTTTAACGAAAGAAGATATTTTATCTGTCATTAAAACACTGATAGATATTCGAAACGGTA TAGGGATGGTTGATGATATCGATCATCTAGGAAATCGTAGGGTAAGAAGTGTTGGTGAAATGACCGAAAATCAGTTTAGA GTAGGTCTTGTTCGTGTTGAACGTGCTGTTAAAGAGCGTTTAAGTTTGGTTGAATCTGAAAATCTGATGCCACAGGACTT AATTAACGCAAAACCAGTATCCGCTGCAATTAAAGAGTTTTTTGGATCCAGTCAGTTATCACAGTTTATGGATCAAGTGA ATCCATTATCTGGTGTTACGCATAAAAGACGTGTATCGGCTCTTGGGCCAGGTGGTTTAACACGTGAGCGGGCTGGATTT GAAGTCCGTGACGTACATACAACACACTATGGTCGTGTGTGTCCAATTGAAACGCCTGAAGGACCAAATATTGGTCTAAT CAATTCACTGTCAGTTTATGCAAGAACTAACGAATATGGATTTATTGAAACTCCTTGTCGAAAGGTCGTTAATGGACGTG TGACAGATGAAGTTGAATACCTATCGGCTATTGAGGAGGTTGATCAATACATTGCACAATCCAATGTTGAGTTAGACGCA CAAGGGAATATTCTTGCTGACTTAGTTCCTTGCAGACATCAAAATGAATTTTCACTGACTACTCCGGATAAAATTAACTA CATGGATGTCTCGCCCAAGCAAATTGTGTCAGTTGCTGCTTCATTGATTCCGTTTTTAGAGCACGATGACGCAAACAGAG CATTAATGGGTTCAAACATGCAACGACAGGCTGTACCAACCTTGCGTTCAGAAAAGCCCTTGGTTGGGACCGGTATGGAA AGAATCGTTGCATCTGATTCAGGAGTCTCAGTTGTTGCGAAGAGAGGTGGAGTTATTGATCTGGTTGATGCTTCTCGTAT TGTTGTTCGAGTGAATGACGACGAAACAACAGCAGGGGAAACAGGGGTAGATATTTATAACTTAACCAAGTATTTCCGTT CTAACCAGGATACTTGTATCAATCAAAGACCCATAGTATCAACAGGTGATCGAATTCAACGAGGTGATGTCCTCGCTGAT GGTCCATGTACAGATATGGGTGAATTGGCTCTTGGACAGAATCTACTGGTAGCGTTTATGCCTTGGAATGGTTATAACTT TGAGGATTCCATTCTTATATCTGAACGAATCGTTCATGACGACAGATTCACAACTATCCACATCGAAGAGCTAACATGTA TAGCTCGAGATACCAAATTAGGTACAGAAGAAATTACTGCAGATATTCCCAATGTAGGCGAGTCTGCACTCTCCAATTTG GATGAATCTGGAGTTGTTTACATAGGTGCAGAAGTTAAAGCAGGTGATATTCTTGTGGGGAAAGTAACTCCTAAAGGAGA AACCCAACTAACTCCAGAAGAAAAACTGTTAAGAGCTATCTTTGGTGAAAAAGCTTCAGATGTTAAAGATTCATCATTGA GAGTTCCATCAGGTATGAATGGAACAGTGATCGATGTACAAGTCTTTACCCGTGATGGACTTGAAAAGGATGCCCGTGCT AAAAGCATAGAAGAAGAGCATCTGGCTCGAGTTCGCAAGGATTTAATAGACGAACGGCGTATTCGTGAAGAAGACATCTA TCATAGAGTTTCTCATTTGCTGTTGGATAAGGTGGCAACAGGCGGTCCTGGAAGCCTAAAGCCTGGGTCTAAAATCACCC AGGATTACCTGGATAAAGTTGAAAGAGAAAAGTGGTTTGATATTCGTATAGAAGATGACGCAATTAGTCAGCAACTTGAA CAACTATCCAAGCAGCTGGAACTTTTAACAAAAGAAATGGAAAAGCGCTTTAACGACAGTAGAAAGAAAATTATCCAGGG AGACGATTTGGCTCCTGGTGTATTAAAAATTGTTAAAGTGTATTTGGCTGTTAAAAGAAGAATTCAGCCTGGAGACAAAA TGGCAGGTCGTCATGGAAACAAGGGTGTGATCTCCATTGTTGTTCCAGTTGAAGATATGCCACATATGGAAGATGGAACG GCTGTAGATATCGTGCTTAATCCATTGGGCGTACCATCGCGAATGAATATCGGCCAGGTTCTTGAAACGCATCTGGGACT AGCTGCCAAAGGATTGGGAAGAAAGATTGCACAGATGCTTGATGAAAAGCAAACACCTGAAGCAATAAAAGCATACCTTG AGAAAATTTATAATCATGACGGAGTGCAGCGTGTTAATTTGAAATGCCTCAATGATGATGAATTGATGACACTGGCGGAT AACCTGAGATCTGGTGTGCCGATGGCAACTCCCGTCTTTGATGGTGCTACTGAGCAAGAAATCAAAAGTATGTTGCAGTT AGCAGATTTGCCAGCAGATGGTAAAACCGTGTTGATAGATGGCAGAACAGGTAATAAATTTGATAATCCGGTTACTGTAG GCTACATGTATATGTTGAAGTTAAACCATTTGGTTGATGACAAGATGCATGCTCGTTCAACTGGATCATACAGTTTGGTC ACTCAACAACCACTTGGCGGTAAAGCACAGTTTGGTGGTCAGCGTTTTGGTGAGATGGAAGTATGGGCATTAGAAGCATA TGGTGCAGCATACACTTTACAAGAAATGTTAACCGTAAAATCAGATGACGTCGGAGGTCGAACAAAGATCTATAAAAATA TAGTCGATGGAGATCATCGTATGGACCCAGGAATGCCTGAATCCTTCAATGTATTATTGAAGGAAATTAGAGCACTGGGA ATTGATATCGAGTTGGAGCATGACTAA Protein sequence : MAVAEAKPQYSHAEKKRFRKSFGKQTDIMPIPNLLEIQLKSYRDFLQTDTKLSEQLNTGLHAAFSSVFPIESFSGNARLE YVGYKLGEPAFDVRECKLRGLTYSAPLRVKIRLVVLDKDASDDPKPIKDIREQDVFMGEIPLMTDVGTFVVNGTERVVVS QLHRSPGVIFEHDKGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDCVYVRIDRRRKLPVTILLRALGYEAEDILSEFFET TRCHLKNGEYHIDLIPQRLRGEIASFDIHVPETGELIVEQGRRITARHIKQMEKSQMQDLVVPRDYLIGKTLAKNIIDTS TGEFLAQANDEITEELLDAMANHGILQIDMIYTNDLDHGSYISDTLKIDPTGSQLEALVEIYRMMRPGEPPTKEAAEALF KNLFFVEERYDLSAVGRMKFNRRVGIKSDEGPGTLTKEDILSVIKTLIDIRNGIGMVDDIDHLGNRRVRSVGEMTENQFR VGLVRVERAVKERLSLVESENLMPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSGVTHKRRVSALGPGGLTRERAGF EVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFIETPCRKVVNGRVTDEVEYLSAIEEVDQYIAQSNVELDA QGNILADLVPCRHQNEFSLTTPDKINYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGME RIVASDSGVSVVAKRGGVIDLVDASRIVVRVNDDETTAGETGVDIYNLTKYFRSNQDTCINQRPIVSTGDRIQRGDVLAD GPCTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVHDDRFTTIHIEELTCIARDTKLGTEEITADIPNVGESALSNL DESGVVYIGAEVKAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMNGTVIDVQVFTRDGLEKDARA KSIEEEHLARVRKDLIDERRIREEDIYHRVSHLLLDKVATGGPGSLKPGSKITQDYLDKVEREKWFDIRIEDDAISQQLE QLSKQLELLTKEMEKRFNDSRKKIIQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISIVVPVEDMPHMEDGT AVDIVLNPLGVPSRMNIGQVLETHLGLAAKGLGRKIAQMLDEKQTPEAIKAYLEKIYNHDGVQRVNLKCLNDDELMTLAD NLRSGVPMATPVFDGATEQEIKSMLQLADLPADGKTVLIDGRTGNKFDNPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVGGRTKIYKNIVDGDHRMDPGMPESFNVLLKEIRALG IDIELEHD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 70 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 70 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 99 |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 70 |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 70 |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 70 |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 70 |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 70 |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 70 |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 70 |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 70 |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 70 |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 70 |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 69 |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 69 |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 67 |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 67 |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 64 |
| rpoB | YP_006504428.1 | RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 0.0 | 45 |
