Gene Information

Name : csoS1A_1 (HMPREF9154_2976)
Accession : YP_006513107.1
Strain : Propionibacterium propionicum F0230a
Genome accession: NC_018142
Putative virulence/resistance : Virulence
Product : major carboxysome shell protein 1A
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3219508 - 3219786 bp
Length : 279 bp
Strand : +
Note : -

DNA sequence : 
ATGCAGGAAGCGCTCGGAATGGTCGAGACGAAGGGCTATGTCGGAGCGGTTGAAGCCGCCGACGCCATGGTCAAGTCCGC
AAATGTGTCCCTGGTGGGCAGCGAGAAGATCGGTGCCGGCTACGTGACCGTGCTGGTGCGCGGCGACGTCGGCGCGGTCA
AGGCCGCCACCGACGCGGGCGCCTCGGCGGCGGAGCGGGTGGGTGAGCTCATCAGCGTCCACGTGATCCCGCGCCCCCAC
AACGACGTCGAGAAGATCCTCCCCGCCCAGGCCAAGTAG

Protein sequence : 
MQEALGMVETKGYVGAVEAADAMVKSANVSLVGSEKIGAGYVTVLVRGDVGAVKAATDAGASAAERVGELISVHVIPRPH
NDVEKILPAQAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 2e-21 59
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 2e-20 59
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 7e-21 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
csoS1A_1 YP_006513107.1 major carboxysome shell protein 1A VFG1596 Protein 9e-22 59
csoS1A_1 YP_006513107.1 major carboxysome shell protein 1A VFG1598 Protein 9e-21 59
csoS1A_1 YP_006513107.1 major carboxysome shell protein 1A VFG1597 Protein 3e-21 58