Gene Information

Name : lolD (PSJM300_12635)
Accession : YP_006524947.1
Strain : Pseudomonas stutzeri DSM 10701
Genome accession: NC_018177
Putative virulence/resistance : Resistance
Product : lipoprotein transporter ATP-binding subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2784374 - 2785072 bp
Length : 699 bp
Strand : +
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGAACGAGCGGTCTTCGAACGAGCAGGCGGTGCTGAGCTGTCGCAACCTGGGCAAACGCTACGAGCAGGGGCCGGAATC
GGTAGAGGTGCTGGCAGGGCTGCAACTGGAGTTGTATCCGGGGCAGCGCGTGGCAATCGTCGGCAGCTCCGGCTCGGGCA
AGAGTACCTTGCTGAACCTGCTAGGCGGCCTGGATACGCCGAGCGAAGGCAGCGTCTGGCTGGCTGGCGAGGAGCTCTCG
GCGCTCAACGAAAAGCAGCGCGGCCTGCTGCGCAACCGGGCGCTGGGCTTCGTCTATCAGTTCCATCATCTGCTGCCGGA
ATTCACCGCGCTGGAAAACGTGTGCATGCCGCTGCTGATCGGCAAGACGGCGATTCCCGAGGCGCGTGAGCGTGCCAGCG
AGCTGTTGCAGCGAGTGGGGCTGGGGCATCGCCTGGCGCACAAGCCCTCGGAGTTGTCCGGTGGTGAGCGGCAGCGTGTG
GCGATAGCGCGGGCGCTGGCCAACCGCCCGGCGCTGGTGCTGCTCGACGAGCCCACCGGCAACCTCGATCATCACACCGC
CCAGGGCATCCAGAGCCTGATGCTCGAATTGAGCTCCACGCTGCGCACGGCGTTCCTGGTGGTGACCCACGACCCGCAGC
TGGCGGCGCAGATGGATCAGGTGCTGCGCCTGGAAGACGGCCGGCTGGTGGCCGAATGA

Protein sequence : 
MNERSSNEQAVLSCRNLGKRYEQGPESVEVLAGLQLELYPGQRVAIVGSSGSGKSTLLNLLGGLDTPSEGSVWLAGEELS
ALNEKQRGLLRNRALGFVYQFHHLLPEFTALENVCMPLLIGKTAIPEARERASELLQRVGLGHRLAHKPSELSGGERQRV
AIARALANRPALVLLDEPTGNLDHHTAQGIQSLMLELSSTLRTAFLVVTHDPQLAAQMDQVLRLEDGRLVAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_006524947.1 lipoprotein transporter ATP-binding subunit NC_012469.1.7686878. Protein 2e-37 47
lolD YP_006524947.1 lipoprotein transporter ATP-binding subunit NC_008702.1.4606598. Protein 1e-32 44