Gene Information

Name : T1E_2201 (T1E_2201)
Accession : YP_006532841.1
Strain : Pseudomonas putida DOT-T1E
Genome accession: NC_018220
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2410651 - 2411169 bp
Length : 519 bp
Strand : +
Note : -

DNA sequence :

TTGTCTTCTGCACAAAGCCCACACGCCGATCTGGTCGGTGCGCTGTACCGCGACCACCGCGGCTGGCTGCTCGCCTGGCT
GCAACGCAGCATGGCCTGCCGCCAACGTGCCGAAGACCTGAGCCAGGACACCTTCGTGCGCCTGCTTGGTCGTGAGCAAC
TGGAGACACCCCGCGAACCCCGCGCGTTTCTGGCCGCCGTGGCCAAGGGGCTGATGTTCGACCACTTCCGTCGCACCGCG
CTGGAACAAGCCTACCTGGCCGAACTGGCATTGATCCCTGAAGCCGAACAGCCCTCGCCAGAAATGCAGCACCTGATCCT
TGAAGACCTCAAAGCCATCGACCGCCTGCTCGGCAAGCTGTCGAGCAAGGCTCGCGCGGCGTTTCTGCACAGCCGCCTGG
ACGGCATGGGCCATGCCGAGATTGCCGAGCGCCTTGGCGTTTCGGTGTCGCGGGTGCGCCAGTACATCGCCCAAGGGATG
CGCCAGTGCTATGTAGCCCTGTATGGGGAGCCGACGTGA

Protein sequence :

MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLETPREPRAFLAAVAKGLMFDHFRRTA
LEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKLSSKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGM
RQCYVALYGEPT

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	5e-29	47

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
T1E_2201	YP_006532841.1	RNA polymerase sigma factor	VFG1049	Protein	2e-29	47