Gene Information

Name : T1E_0092 (T1E_0092)
Accession : YP_006530742.1
Strain : Pseudomonas putida DOT-T1E
Genome accession: NC_018220
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 104850 - 105353 bp
Length : 504 bp
Strand : +
Note : -

DNA sequence : 
ATGCCCAGCAACGATTCCGTGCAAACGCTCTACAGTGACCACCACGGCTGGTTGCATACCTGGCTGCGTAGCAAGCTCGG
CAACGCAGCCGATGCGGCTGACCTCGCCCAAGATACCTTCGTCCGCTTGCTACAGCGTCGTGAACAATTGCAGCTGAATA
CTCCCAGGGCCTTCCTACGCACGGTAGCGCGTGGGTTGGTGATCGATCATTGGCGCCGCGAGGAACTGCACAGGGCCTAC
CTGGAGGCTTTGGCCCATGTGCCGGAAGCCCTGGCCCCCTCAGTCGAGACCCGCGAGCTGCTGCTGGAATTGCTTGAGCG
TATTGCACGCATGCTCGACGGCCTCAAACCCAAGGTCCGTCGCGCATTCCTGCTGGCTCAATGCGAGGGGCTGAAGCATC
AGGCCATCGCCGAACAGATGGGGATCTCCGTGCGCACCGTTGAGCGCTACATCGCCGATGCGCTCTATCACTGCTACGTG
CTGCGCTATGAAGACGACTGCTGA

Protein sequence : 
MPSNDSVQTLYSDHHGWLHTWLRSKLGNAADAADLAQDTFVRLLQRREQLQLNTPRAFLRTVARGLVIDHWRREELHRAY
LEALAHVPEALAPSVETRELLLELLERIARMLDGLKPKVRRAFLLAQCEGLKHQAIAEQMGISVRTVERYIADALYHCYV
LRYEDDC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 2e-29 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
T1E_0092 YP_006530742.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 7e-30 47