|
Name : GEM_3038 (GEM_3038) Accession : YP_006617128.1 Strain : Genome accession: NC_018513 Putative virulence/resistance : Virulence Product : type VI secretion ATPase, ClpV1 family Function : - COG functional category : - COG ID : - EC number : 3.6.1.15 Position : 3321986 - 3324655 bp Length : 2670 bp Strand : - Note : - DNA sequence : ATGAGCACGCCTCTGAAGACCCTGATCACGAAACTGAACCCGCTGTGCCGGCACGCGGCCGAGCGTGCGGCGAGCGCGTG CCTGGCGCGCGGCCACTACGAGGTCGATCTGGAGCACCTGTTCCTCGCGCTGCTCGACGAAGCGACGGGCGACCTGCCGC TCGCGCTGCGCGCGAGCCGCGTCGATCCGCATGCGCTGCGTGCCGATCTCGAGCGCGAACTCACGCGCCTGAAGACGGGC AACACGCGCACGCCGGTGTTTTCCGTGCACCTGATCGCGCTGTTCGAGCAGGCGTGGCTGATCGCGTCGCTCGATTCGCA GCTCGGCCGGATCCGCTCGGGCCACCTGCTGCTCGCGCTGTTGACCGCGCCCGATCTCGCGCAGTTCGCGCAACGGATGT CGTCGCAGTTCGCGGAAATGAACGTGACCGACCTGAAGCACAAGTTCGACGAGATCATGGCCGGGTCGAGCGAGGCCGAG CCGCGCCAGCCGGACGCGGAAGGCGCCGACGTCGCGCCGGCTCTCGACGGAGCCGCGCCCGCGGCCGGCCCGTCGAAGAC GCCCGCGCTCGACACCTACACGACCAACCTCACGCAGCGCGCGCGCGACGGCAAGATCGACCCGGTGATCGGCCGCGAAG CCGAGATCCGCCAGGCCATCGACATCCTGATGCGCCGCCGCCAGAACAACCCGATCATGACCGGCGAGGCCGGCGTCGGC AAAACGGCGGTCGTCGAGGGCCTCGCGCTGCGGATCGCGGCCGACGACGTGCCGCCGCCGTTGCGCGGCGTCGCGCTGCA CGTGCTCGACATGGGGCTGCTGCAAGCCGGCGCGAGCGTGAAGGGCGAGTTCGAGAACCGCCTGAAGAGCGTGATCGACG AGGTGAAGAAGAGCGCGCACCCGATCATCCTGTTCATCGACGAGGCGCACACGATCATCGGCGCAGGCGGCCAGGCCGGC CAGAACGACGCGGCGAACCTGCTGAAGCCGGCGCTCGCGCGCGGCGAGCTGCGCACGATCGCCGCGACAACGTGGAGCGA ATACAAGAAGTACTTCGAGAAGGACGCGGCGCTCGCGCGGCGCTTCCAGGTCGTGAAGGTCGAGGAGCCGAGCGAGCCGC TCGCGGCCGCGATGCTGCGCGGGATGTCGGGGTTGATGGAACAGCACTTCAACGTGCGAATCCTCGACGACGCGATCACC GAGGCCGTGCGCCTGTCGCATCGCTACATCAGCGGCCGGCAGCTGCCGGACAAGGCGATCAGCGTGCTCGACACCGCCTG TGCGAAGGTCGCGCTCGCGCACAGCGCGACGCCGGCGGCGATCGACGACACGAAGAAGCGCATCGAGCGCATCGACGCGG AGATCGCGTCGCTGGAGCGCGAAGCGGCGGGCGGTGCGGCGCACGACGAGCGGCTCGGCGAGCTGCGCGGCGCGCGCGAC ACGGCGCTCGAACAGCTTGCGCAGGACGAGGCACGCTATGAAGCGGAACGTGTGATCGTCGCCGAGATCACCGAGCTGCG GGACGCGCTCGACAAGGCGCGAGGTCCGTCGGAACACGGCGAGCCGGTCGACGTGCCGGCCACGCGCGACAAGCTGGCCG AACGCGTCGCGGCGCTGCACGCGTTGCAGGGCGGCGAGCCGATGGTGCCGCTGCAGGTCGACGGCCACGTCGTCGCCGGG ATCGTCGCCGCCTGGACCGGCATTCCGCTCGGCCGGATGGTGAAGGACGAGATCGACACCGTGCTGAACCTGCAGCCGCT GCTGACCGCGCGCGTGATCGGCCAGGACCATGCGCTCGACGCGATCGCGCAGCGCGTGCGCACCGCGACCGCGAACCTCG AGGATCCGAACAAGCCGCGCGGCGTGTTCATGTTCGTCGGGCCGTCGGGCGTCGGCAAGACCGAGACGGCGCTCGCGCTG GCCGACATCCTGTACGGCGGCGAGCGCAAGATGGTCACGATCAACATGAGCGAGTACCAGGAAGCGCACAGCGTGTCGGG CCTGAAGGGTTCGCCGCCGGGCTACGTCGGCTACGGCGAGGGCGGCGTGCTGACCGAGGCGGTGCGCCGCAACCCGTATT CCGTCGTGCTGCTCGACGAGGTCGAGAAGGCCCACCCGGACGTGCTCGAGATGTTCTTCCAGGTGTTCGACAAGGGCACG ATGGACGACGCCGAGGGGCGCGAGATCGACTTCCGCAACACGCTGATCATCCTGACGTCGAACGTCGGGTCGGCCGCGGT GATGCAGGCGTGCCTGAACAAGCCGGCCGAGGAACTGCCCGATCCGGACGCGCTCGCCGAGGCGCTGCGCCCGCAGCTGT ACAAGACGTTCAAACCGGCGTTCCTCGGCCGGATGAAGGTCGTGCCGTACTATCCGATTTCCGACGACGTGCTGGCCGAG ATCATCGAGCTGAAGCTCGAACGGATCCGCCGCCGCATCGATGCGAACCACAAGGCCGCGTTCGAGTGGGATGAATCGCT CGTCGACGCGGTGCTCGCGCGCTGCACCGAGGTCGATTCGGGCGCCCGCAACGTCGACCATATCCTGAACGGTACGCTGC TGCCGGAGATCGCGGGCCACGTGCTCGGCCGGATCGCCGACGGCGCGGCCATCGCGCGCATTGCGGTGCGCGCGGACGAG GCCGGCGAATTCGCGTACACCGTCGAATGA Protein sequence : MSTPLKTLITKLNPLCRHAAERAASACLARGHYEVDLEHLFLALLDEATGDLPLALRASRVDPHALRADLERELTRLKTG NTRTPVFSVHLIALFEQAWLIASLDSQLGRIRSGHLLLALLTAPDLAQFAQRMSSQFAEMNVTDLKHKFDEIMAGSSEAE PRQPDAEGADVAPALDGAAPAAGPSKTPALDTYTTNLTQRARDGKIDPVIGREAEIRQAIDILMRRRQNNPIMTGEAGVG KTAVVEGLALRIAADDVPPPLRGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAHPIILFIDEAHTIIGAGGQAG QNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKVEEPSEPLAAAMLRGMSGLMEQHFNVRILDDAIT EAVRLSHRYISGRQLPDKAISVLDTACAKVALAHSATPAAIDDTKKRIERIDAEIASLEREAAGGAAHDERLGELRGARD TALEQLAQDEARYEAERVIVAEITELRDALDKARGPSEHGEPVDVPATRDKLAERVAALHALQGGEPMVPLQVDGHVVAG IVAAWTGIPLGRMVKDEIDTVLNLQPLLTARVIGQDHALDAIAQRVRTATANLEDPNKPRGVFMFVGPSGVGKTETALAL ADILYGGERKMVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGT MDDAEGREIDFRNTLIILTSNVGSAAVMQACLNKPAEELPDPDALAEALRPQLYKTFKPAFLGRMKVVPYYPISDDVLAE IIELKLERIRRRIDANHKAAFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEIAGHVLGRIADGAAIARIAVRADE AGEFAYTVE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 4e-148 | 49 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 3e-127 | 43 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 2e-127 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| GEM_3038 | YP_006617128.1 | type VI secretion ATPase, ClpV1 family | VFG2076 | Protein | 0.0 | 54 |
| GEM_3038 | YP_006617128.1 | type VI secretion ATPase, ClpV1 family | VFG2084 | Protein | 1e-143 | 45 |
