Gene Information

Name : GEM_3181 (GEM_3181)
Accession : YP_006617270.1
Strain :
Genome accession: NC_018513
Putative virulence/resistance : Unknown
Product : RpoB protein
Function : -
COG functional category : -
COG ID : -
EC number : 2.7.7.6
Position : 3455493 - 3459599 bp
Length : 4107 bp
Strand : -
Note : -

DNA sequence : 
ATGCAATATTCCTTCACCGAGAAGAAGCGCATTCGCAAGAGTTTCGCGAAGCGCCCCATCGTTCACCAAGTTCCTTTCTT
GCTGGCTACCCAGCTTGAATCATTCAGCACGTTTCTGCAAGCCGATGTGCCGGCCACGCAACGCAAGCCTGAAGGTTTGC
AGGCCGCATTCACATCGGTATTTCCCATTGTTTCGCACAACGGTTTCGCGCGCCTCGAGTTCGTGAGCTATGCGCTGTCC
GCGCCGGCATTCAACATCAAGGAATGCCAGCAGCGTGGCCTGACGTACTGCTCCGCGCTGCGCGCGAAGGTCCGCCTCGT
CATCCTCGACAAGGAATCGCCGAACAAGCCGGTCGTCAAGGAAGTGAAGGAGCAGGAAGTGTACATGGGCGAAATGCCGC
TCATGACGCCGACGGGCTCGTTCGTCATCAACGGCACCGAGCGTGTCATCGTCTCGCAGCTGCACCGTTCGCCGGGCGTG
TTCTTCGAACACGACAAGGGCAAGACGCACAGCTCGGGCAAGCTGCTGTTCTCGGCACGGATCATTCCGTACCGCGGCTC
GTGGCTCGACTTCGAATTCGATCCGAAGGACATCCTGTACTTCCGCGTCGACCGTCGCCGCAAGATGCCGGTCACGATCC
TGCTGAAGGCCATCGGCCTCACGCCGGAACAGATCCTCGCGAACTTCTTCGTGTTCGACAACTTCACGCTGATGGGCGAA
GGCGCGCAACTCGAGTTCGTGCCCGAGCGCCTGCGTGGCGAAGTCGCGCGCTTCGACATCACGGATCGTGATGGCAAGGT
CATCGTCCAGAAGGACAAGCGGATCAACGCGAAGCACATTCGCGACCTCGAAGCCGCGAAGACCAAGTTCATCTCGGTGC
CGGAAGACTATCTGCTCGGCCGCGTGCTGGCGAAGAACGTCGTCGACGGCGATACCGGCGAAGTGATCGCGAGCGCGAAC
GACGAAGTCACGGAAAGCGTGCTCGAGAAGCTGCGCGAAGCGGACATCAAGGACATCCAGACGCTCTACACGAACGATCT
GGATCAGGGTCCGTACATCTCGTCGACGCTGCGTGTCGACGAAACGACCGACAAGACGGCCGCGCGCATCGCGATCTACC
GCATGATGCGTCCGGGCGAGCCGCCGACCGAAGAAGCGGTCGAGGCCCTGTTCAACCGTCTGTTCTACAGCGAAGAAGCG
TACGACCTGTCGAAGGTCGGCCGTATGAAGTTCAACCGCCGCGTCAGCCGTGACGAGATCACCGGCCCGATGACGCTGCA
GGACGACGACATCCTCGCGACGATCAAGATCCTCGTCGAGCTGCGCAACGGCAAGGGCGAAGTGGACGACATCGACCACC
TCGGCAACCGTCGCGTGCGTTGCGTCGGCGAACTGGCGGAAAACCAGTTCCGCGCGGGTCTTGTGCGTGTCGAGCGCGCG
GTCAAGGAACGCCTCGGTCAGGCCGAAAGCGAAAACCTGATGCCGCATGACCTGATCAACTCGAAGCCGATTTCGTCGGC
GATCCGCGAGTTCTTCGGTTCGTCGCAGCTGTCGCAGTTCATGGACCAGACCAACCCGCTGTCGGAAATCACGCACAAGC
GCCGTGTTTCCGCACTGGGCCCGGGCGGTCTGACGCGCGAACGCGCAGGCTTTGAAGTTCGTGACGTGCACCCGACCCAC
TATGGCCGCGTGTGCCCGATCGAAACGCCGGAAGGTCCGAACATCGGTCTGATCAACTCGCTCGCACTGTATGCGCACCT
GAACGAGTACGGCTTCCTCGAGACGCCGTACCGCAAGGTCGTGGACAGCAAGGTGACCGACCAGATCGACTACCTGTCGG
CGATCGAAGAAGGCCGCTACATGATCGCGCAGGCGAACGCCGCGATCGACGAGAACGGCCAGCTGATCGACGAACTCGTG
TCGTCGCGTGAAGCCGGCGAAACGATGATGGTCACGCCGGATCGTATCCAGTACATGGACGTCGCGCCGTCGCAGATCGT
GTCGGTTGCAGCTTCGCTGATCCCGTTCCTCGAGCACGACGATGCGAACCGTGCACTGATGGGTTCGAACATGCAGCGTC
AGGCCGTGCCGTGTCTGCGTCCGGAGAAGCCGGTCGTCGGTACGGGCATCGAGCGTACCTGCGCGGTTGACTCGGGCACG
ACGGTTCAGGCATTCCGTGGCGGCGTCGTCGACTATGTCGACGCAGGCCGTATCGTGATTCGCGTGAACGACGACGAAGC
CGTCGCGGGTGAAGTCGGTGTCGACATCTACAACCTGATCAAGTACACGCGTTCGAACCAGAACACGAACATCAACCAGC
GTCCGATCGTGAAGATGGGCGACAAGGTCTCGCGCGGCGACGTGCTGGCCGACGGCGCCTCGACGGACCTGGGCGAGCTC
GCGCTCGGCCAGAACATGCTGATCGCGTTCATGCCGTGGAACGGCTACAACTTCGAGGATTCGATCCTGATCTCGGAGAA
GGTCGTGGCCGACGATCGCTACACGTCGATCCACATCGAAGAGCTGAACGTCGTTGCACGTGACACGAAGCTCGGGCCGG
AAGAAATCACGCGCGACATCTCGAACCTGGCGGAAGTCCAGCTCGGCCGTCTCGACGAATCGGGCATCGTGTACATCGGT
GCTGAAGTCGAAGCGGGCGACGTGATGGTCGGCAAGGTCACGCCGAAGGGCGAGACGCAGCTGACGCCGGAAGAGAAGCT
GCTGCGCGCGATCTTCGGCGAGAAGGCTTCGGACGTGAAGGACACGTCGCTGCGCGTGCCGTCGGGCATGAGCGGTACCG
TGATCGACGTCCAGGTGTTCACGCGTGAAGGCATCCAGCGCGACAAGCGTGCGCAACAGATCATCGACGACGAACTGAAG
CGCTACCGTCTCGACCTGAACGACCAGCTGCGCATCGTGGAAGGCGACGCGTTCCAGCGTCTCGCACGCATGCTGGTGGG
CAAGGTTGCGAACGGCGGTCCGAAGAAGCTCGCGAAGGGCACGAAGATCGACCAGGCTTACCTGGAAGACCTCGACCACT
ACCACTGGTTCGACATCCGCCTCGCGGACGACGAAGCAGCGGCGTCGCTCGAAGCGATCAAGAACTCGATCGAAGAGAAG
CGTCACCAGTTCGACCTCGCGTTCGAAGAGAAGCGCAAGAAGCTCACGCAAGGCGACGAACTGCCGCCGGGCGTGCTGAA
GATGGTCAAGGTGTACCTGGCGGTGAAGCGCCGCCTGCAGCCTGGCGACAAGATGGCAGGCCGTCACGGTAACAAGGGTG
TCGTGTCGAAGATCGTTCCGATCGAAGACATGCCGTACATGGCCGATGGCCGTCCGGCAGACGTCGTGCTGAACCCGCTC
GGCGTGCCGTCGCGGATGAACGTGGGTCAGGTTCTGGAAGTGCACCTCGGCTGGGCCGCGAAGGGCCTCGGCTGGCGTAT
CGGCGAAATGCTGCAGCGTCAGGCGAAGATCGAGGAAATGCGCGTATTCCTGACGAAGATCTACAACGATTCGGGCCGCC
AGGAAGATCTGGAAAGCTTCACCGACGACGAGATCCTCGAACTCGCGAAGAACCTGCGTGAAGGCGTGCCGTTCGCAACG
CCGGTGTTCGACGGTGCGACCGAGGAAGAAATGAGCAAGATGCTCGATCTGGCCTTCCCGGACGACATCGCGGAACAGCT
CGGCATGAACCCGTCGAAGAACCAGGTCCGTCTGTACGATGGCCGCACGGGTGAAATGTTCGAACGTCGCGTGACGCTTG
GCTACATGCACTACCTGAAGCTGCACCACTTGGTCGACGACAAGATGCACGCGCGTTCGACGGGCCCGTACTCGCTCGTC
ACGCAGCAGCCGCTGGGTGGTAAGGCGCAGTTCGGTGGCCAGCGTTTCGGTGAAATGGAAGTGTGGGCACTCGAAGCGTA
CGGCGCGTCCTACGTGCTGCAGGAAATGCTGACGGTGAAGTCGGATGACGTGAACGGCCGGACCAAGGTCTATGAGAACC
TGGTCAAGGGCGATCATGTGATCGATGCAGGCATGCCGGAATCCTTCAACGTGCTCGTGAAGGAAATCCGCTCGCTCGGT
ATCGACATCGATCTCGACCGCAATTAA

Protein sequence : 
MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADVPATQRKPEGLQAAFTSVFPIVSHNGFARLEFVSYALS
APAFNIKECQQRGLTYCSALRAKVRLVILDKESPNKPVVKEVKEQEVYMGEMPLMTPTGSFVINGTERVIVSQLHRSPGV
FFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMGE
GAQLEFVPERLRGEVARFDITDRDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDYLLGRVLAKNVVDGDTGEVIASAN
DEVTESVLEKLREADIKDIQTLYTNDLDQGPYISSTLRVDETTDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEA
YDLSKVGRMKFNRRVSRDEITGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTH
YGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKVVDSKVTDQIDYLSAIEEGRYMIAQANAAIDENGQLIDELV
SSREAGETMMVTPDRIQYMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAVDSGT
TVQAFRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKMGDKVSRGDVLADGASTDLGEL
ALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSIHIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIG
AEVEAGDVMVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWFDIRLADDEAAASLEAIKNSIEEK
RHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPL
GVPSRMNVGQVLEVHLGWAAKGLGWRIGEMLQRQAKIEEMRVFLTKIYNDSGRQEDLESFTDDEILELAKNLREGVPFAT
PVFDGATEEEMSKMLDLAFPDDIAEQLGMNPSKNQVRLYDGRTGEMFERRVTLGYMHYLKLHHLVDDKMHARSTGPYSLV
TQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLG
IDIDLDRN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00346 YP_008207811.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR25 Protein 0.0 65
BJAB0868_00350 YP_008211676.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR26 Protein 0.0 65

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GEM_3181 YP_006617270.1 RpoB protein CP002695.1.gene18.p0 Protein 0.0 82
GEM_3181 YP_006617270.1 RpoB protein NC_008702.1.4609796. Protein 0.0 77
GEM_3181 YP_006617270.1 RpoB protein NC_011035.1.6448762. Protein 0.0 74
GEM_3181 YP_006617270.1 RpoB protein NC_002516.2.881699.p Protein 0.0 68
GEM_3181 YP_006617270.1 RpoB protein CP000034.1.gene3741. Protein 0.0 66
GEM_3181 YP_006617270.1 RpoB protein CP001918.1.gene250.p Protein 0.0 66
GEM_3181 YP_006617270.1 RpoB protein NC_002695.1.914942.p Protein 0.0 66
GEM_3181 YP_006617270.1 RpoB protein CP000647.1.gene4402. Protein 0.0 66
GEM_3181 YP_006617270.1 RpoB protein CP000675.2.gene392.p Protein 0.0 66
GEM_3181 YP_006617270.1 RpoB protein CP001138.1.gene4362. Protein 0.0 65
GEM_3181 YP_006617270.1 RpoB protein CP004022.1.gene2794. Protein 0.0 65
GEM_3181 YP_006617270.1 RpoB protein NC_009085.4918494.p0 Protein 0.0 65
GEM_3181 YP_006617270.1 RpoB protein NC_010400.5987325.p0 Protein 0.0 65
GEM_3181 YP_006617270.1 RpoB protein NC_010410.6003841.p0 Protein 0.0 65
GEM_3181 YP_006617270.1 RpoB protein NC_011586.7046027.p0 Protein 0.0 65
GEM_3181 YP_006617270.1 RpoB protein NC_010611.6233925.p0 Protein 0.0 65
GEM_3181 YP_006617270.1 RpoB protein NC_011595.7060572.p0 Protein 0.0 65
GEM_3181 YP_006617270.1 RpoB protein AM180355.1.gene120.p Protein 0.0 46
GEM_3181 YP_006617270.1 RpoB protein NC_002953.2862188.p0 Protein 0.0 45
GEM_3181 YP_006617270.1 RpoB protein NC_013450.8613267.p0 Protein 0.0 45
GEM_3181 YP_006617270.1 RpoB protein NC_007793.3914836.p0 Protein 0.0 45
GEM_3181 YP_006617270.1 RpoB protein NC_003923.1002608.p0 Protein 0.0 45
GEM_3181 YP_006617270.1 RpoB protein NC_002951.3236234.p0 Protein 0.0 45
GEM_3181 YP_006617270.1 RpoB protein NC_009641.5330265.p0 Protein 0.0 45
GEM_3181 YP_006617270.1 RpoB protein NC_002758.1120515.p0 Protein 0.0 45
GEM_3181 YP_006617270.1 RpoB protein NC_010079.5776819.p0 Protein 0.0 45
GEM_3181 YP_006617270.1 RpoB protein NC_002952.2860169.p0 Protein 0.0 45
GEM_3181 YP_006617270.1 RpoB protein NC_007622.3792928.p0 Protein 0.0 45
GEM_3181 YP_006617270.1 RpoB protein NC_002745.1123305.p0 Protein 0.0 45
GEM_3181 YP_006617270.1 RpoB protein NC_007795.3920377.p0 Protein 0.0 45
GEM_3181 YP_006617270.1 RpoB protein NC_009632.5315067.p0 Protein 0.0 45
GEM_3181 YP_006617270.1 RpoB protein NC_009487.5169226.p0 Protein 0.0 45
GEM_3181 YP_006617270.1 RpoB protein NC_009782.5559150.p0 Protein 0.0 45
GEM_3181 YP_006617270.1 RpoB protein AE016830.1.gene3155. Protein 0.0 45
GEM_3181 YP_006617270.1 RpoB protein CP003583.1.gene2745. Protein 0.0 45
GEM_3181 YP_006617270.1 RpoB protein NC_012469.1.7686402. Protein 1e-175 43