Gene Information

Name : PCC21_010070 (PCC21_010070)
Accession : YP_006645663.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : TonB-dependent siderophore receptor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1134001 - 1136349 bp
Length : 2349 bp
Strand : -
Note : -

DNA sequence :
ATGACGCTCTTACGCGCCTTTCGTAAAGCAACCCCTTTAGCCATGGCGATACAGCTCAGCCTGCTGTCGACAGTCGGTCT
TACGACAGGGATGGCCCACGCCGCGACAGTTCCCGCCACCGCACGCTACGATATTGCTGCTGGCGAGTTAGACAAAGCGC
TCAACCACTATGCCGCCCGCAGCGGGATTACGCTGTCGGTCGATGCCAGCCTGACGCAGGGTAAACGCAGCAACGGCCTG
CACGGCGACTACACCATTGACGGCGGTCTGAAAGCCCTGCTGGCGGGTAGCGGTCTGCAACTGAAGGCGCTCGGCGATAA
CGCCTGGACGCTGGAACCGATCCCAGCAGCAGCGGAAGAAACGCTGACGGTCGTTGGCGACTGGTTGGGGGAAGCGCGTG
AAAATGACGTCTTTGAACACGCCGGCGCACGCGATGTGATCCGTCGTGAGGACTTCGCCAAGACCGGTGCCACCACGATG
CGCGATGTCTTAAACCGTATGCCGGGCGTGTATGCGCCGGAAAATAACGGCACGGGCAGCCACGATCTGGCCATGAATTT
TGGTATTCGTGGTCTCAGCCCGCGCCTTGCCAGCCGTTCCACCGTACTGATGGACGGCATTCCGGTGCCGTTTGCGCCCT
ACGGTCAGCCACAGCTTTCCCTCGCGCCCATCTCACTTGGCAATATGGACGCCATTGATGTCGTGCGCGGCGGCGGTGCC
GTACGCTACGGGCCACAGAGCGTCGGCGGCGTCGTGAACTTCGTCACCCGGGCGATCCCGAAAGAATTTGGCATGAGCGC
TGGCATAGAAGGCCAACACAGCCCGACGTCTTCACAACACAACCCGAAAGAAACGCACAACCTGCTGGTTGGTGGCACGG
CGGATAACGGTTTTGGGTCGGCGCTGCTCTATTCCGGCACGCGCGGCAGCGACTGGCGCGAGCACAGCGCGACGCGCATT
GACGACGTGATGCTAAAAAGCCGCTACGCGCCAAACGACGTGCACACGTTTAACAGCCTGCTGCAATATTACGATGGCAG
CGCCGATATGCCGGGCGGCCTGTCGCGTGCCGATTACAATGCGGACCGCTGGCAGTCAACGCGCCCGTACGATCGCTTCT
GGGGGCGTCGTCAGCTTGCCAGTCTGGGCTATCAATACCAGCCGGATCAGCAGCATAAATTCAATATTCAGGGTTTCTAC
ACGCGCACGCTGCGCAGTGGCTATCTGGAACAGAATTCCATCATTACCCTGTCGCCGCGTGAATATTGGGTACGTGGCAT
CGAACCGCGCTACAGCCAAAGTTTTACCCTCGGCTCTTCCGCTCATGAAGTGGGCGTCGGCTACCGTTATGTCAGCGAAT
CCACCCATGAGGTGCGTTACTTCACCAGCACCGCCAGCAAGACGCTGCCAAGCGCCAGCAGCCCTATCGACCGCGAAACC
CGTGCGGGTACAGAAGCACACGCCTGGTACATCGACGACCGCGTTGATATCGGCAACTGGACAATTACGCCGGGAATGCG
CTTTGAGCACATCAAATCTCATCAGGACAACACGCTGAAAGGCACGGGCGAAGCGGTCAGTTACAACGCCCCGCTGCCTG
CCTTGAACGTGCTCTACCACGTTAACGAGAGTTGGAATCTTTATGCAAACACCGAAGGATCATTCGGCACCGTACAGTAC
AGCCGAATTGGCAAGGCTGCTCAAAGCGGCAAAGTGGAGCCAGAAAAAGCGCGCACCTGGGAAGTCGGTTCCCGCTACGA
CGACGGCGCGCTGACGGCAGAAATGGGCGTTTTTCTGGTTAACTTCAATAACCAGTATGACTCCAATCAGACCAACAACA
CCGTCACCACGCGGGGAAAAACCCGCCATTCTGGGCTGGAAACACAGGCTCGTTATCATCTCTCCGAGTTGTCACCCCGC
TTAGACGCGGTGTCAGTTTATGCGCGCTATGCCTATGTGAATGCTGAAATTCGCGAAGCGGGCGATACCTACGGCAATCA
GGTGCCCTTCTCTTCAAAACACCGGGGAGGATTCGGCGTTGATTATCAGCCGGGCAACTGGACGTTCAACCTGAACAGCG
AGTTCCAATCCAGCCAGTTCGCCGATAACGCTAACACCGTTGCCGAAAGCGCCGATGGCAGCGCCGGACGTATCCCCGGC
TTTATGCTGTGGGGCGCACGCGCAGCTTACGACTTTGGCCCGCAGTTCTCGGATCTCAATCTGGCCTTTGGTGTGAAAAA
CCTGTTCGACCACGATTACTACACACGCTCGAACAGCGATGACAACAACAAAGGGATTTATGCCGGTCAGCCCCGCACCT
TCTATATGCAGGGCTCGCTGAAATTCTGA

Protein sequence :
MTLLRAFRKATPLAMAIQLSLLSTVGLTTGMAHAATVPATARYDIAAGELDKALNHYAARSGITLSVDASLTQGKRSNGL
HGDYTIDGGLKALLAGSGLQLKALGDNAWTLEPIPAAAEETLTVVGDWLGEARENDVFEHAGARDVIRREDFAKTGATTM
RDVLNRMPGVYAPENNGTGSHDLAMNFGIRGLSPRLASRSTVLMDGIPVPFAPYGQPQLSLAPISLGNMDAIDVVRGGGA
VRYGPQSVGGVVNFVTRAIPKEFGMSAGIEGQHSPTSSQHNPKETHNLLVGGTADNGFGSALLYSGTRGSDWREHSATRI
DDVMLKSRYAPNDVHTFNSLLQYYDGSADMPGGLSRADYNADRWQSTRPYDRFWGRRQLASLGYQYQPDQQHKFNIQGFY
TRTLRSGYLEQNSIITLSPREYWVRGIEPRYSQSFTLGSSAHEVGVGYRYVSESTHEVRYFTSTASKTLPSASSPIDRET
RAGTEAHAWYIDDRVDIGNWTITPGMRFEHIKSHQDNTLKGTGEAVSYNAPLPALNVLYHVNESWNLYANTEGSFGTVQY
SRIGKAAQSGKVEPEKARTWEVGSRYDDGALTAEMGVFLVNFNNQYDSNQTNNTVTTRGKTRHSGLETQARYHLSELSPR
LDAVSVYARYAYVNAEIREAGDTYGNQVPFSSKHRGGFGVDYQPGNWTFNLNSEFQSSQFADNANTVAESADGSAGRIPG
FMLWGARAAYDFGPQFSDLNLAFGVKNLFDHDYYTRSNSDDNNKGIYAGQPRTFYMQGSLKF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecA AAL08456.2 FecA Not tested SRL Protein 0.0 82

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_010070 YP_006645663.1 TonB-dependent siderophore receptor VFG1047 Protein 0.0 82