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Name : PCC21_010540 (PCC21_010540) Accession : YP_006645710.1 Strain : Pectobacterium carotovorum PCC21 Genome accession: NC_018525 Putative virulence/resistance : Unknown Product : protein-export membrane protein SecD Function : - COG functional category : - COG ID : - EC number : - Position : 1205632 - 1207446 bp Length : 1815 bp Strand : + Note : - DNA sequence : ATGCTGGTCGTGGTGTTGTTTGTCGGCCTGCTCTACGCACTTCCTAACCTATATGGTGAGGATCCGGCGGTACAAGTTAC TGGCGCGCGGGGAACCGCCGCCAGCGAAACGACGCTGATCCAAGTCCAGAATGTTTTAAAAGAACAGAACATTACCAGTA AGTCGATTGCATTGGAAAACGGTGCAATTCTGGCTCGCTTCTCTAACCCTGATGTTCAGCTCCGTGCGCGTGAAGCGCTC GTTAATGAGCTGGGCGAAAAGTTCGTCGTTGCACTTAACCTGGCACCTGCTACGCCAACCTGGCTGCGGTTGTTGGGCGC TGAACCGATGAAACTGGGGCTTGATCTGCGCGGCGGCGTTCACTTCCTGATGGAAGTGGATATGGATACGGCGCTGGGTA AACTACAAGAACAAACTATGGACTCTTTGCGCAGCGATCTGCGTGAGAAGAACATTCCTTATGCCTCCGTGCGTAAAATT GATAATTACGGTGTCGAAATTCGTTTCCGTGATGCTCAAACGCGTGATGAGGGCATCAACTATCTGACGACTCGTCACCG TAATCTGGTTCTCAGCAGCAGCGGCAGCAACCTGCTGCGCGCAGTGATGTCTGACGAACGTCTGCGTGAAGCACGTGAAT ACGCCGTACAGCAGAACATCAATATCCTGCGTAACCGTGTGAACCAACTGGGTGTTGCTGAGCCTCTGGTACAGCGTCAG GGTGCCGATCGCATCGTCGTTGAGTTACCGGGTATTCAGGACACGGCGCGCGCGAAAGAAATTCTTGGTGCAACCGCTAC GCTGGAATTCCGTCTGGTCAACAGTAATGCTGATGCAACCGCAGCGGCGAACGGCCGTGTGCCGGGCGACTCTGAAGTGA AGAACATGCGTGACGGCTCACCTGTGGTGTTGTTCAAGCGTGTGATTCTGACGGGCGACCATATTACCGATTCGACATCG AGTACGGATGAATACAACCAGCCTCAGGTGAATATTTCTCTGGACAGCGCGGGTGGTAACACCATGTCCAACTTCACCAA AGACAGTATCGGTAAGCTGATGGCGACGCTCTTTGTGGAATACAAAGACAGCGGCAAGAAAGATGCAACTGGCCGTTCGA TATTGGAAAAACACGAAGAAGTGATCAACGTAGCGACGATTCAGTCGCGACTGGGTAACAGCTTCCGTATTACCGGCATT GATAACCCGAACGAAGCGCGTCAGCTTTCTCTGCTGCTGCGTGCGGGTGCGCTGATTGCACCGATCCAGATCGTTGAAGA ACGTACCATTGGACCAACGCTGGGGATGCAAAACATCACTCAGGGGCTGGAAGCCTGTTTGTGGGGCTTGATCGCATCGA TCCTCTTTATGGTCTTCTTCTACAAGAAGTTTGGTGTCATCGCGACCAGTGCACTGGTTGCTAACCTGGTGTTGATTGTC GGTGTGATGTCGCTGCTGCCAGGGGCGACGCTGACCATGCCGGGTATCGCGGGTATCGTGCTTACGCTGGCGGTTGCAGT CGATGCTAACGTACTCATTAACGAACGTATCAAAGAAGAACTCAGTAATGGTCGCTCCGTGCAACAGGCCATTCATGAGG GCTACAAAGGTGCATTCAGTTCGATTGTTGATGCGAACGTCACGACGTTGATTAAAGTCATCATCCTGTATGCGGTTGGT ACCGGTTCTATCAAAGGGTTTGCTATCACGACTGCGATTGGGATTGCGACCTCAATGTTTACGGCGATCGTCGGTACTCG TGCCATCGTTAACCTGCTTTACGGCGGTAAACGTATCAACAAGCTGTCTATCTAG Protein sequence : MLVVVLFVGLLYALPNLYGEDPAVQVTGARGTAASETTLIQVQNVLKEQNITSKSIALENGAILARFSNPDVQLRAREAL VNELGEKFVVALNLAPATPTWLRLLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDSLRSDLREKNIPYASVRKI DNYGVEIRFRDAQTRDEGINYLTTRHRNLVLSSSGSNLLRAVMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQ GADRIVVELPGIQDTARAKEILGATATLEFRLVNSNADATAAANGRVPGDSEVKNMRDGSPVVLFKRVILTGDHITDSTS STDEYNQPQVNISLDSAGGNTMSNFTKDSIGKLMATLFVEYKDSGKKDATGRSILEKHEEVINVATIQSRLGNSFRITGI DNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYKKFGVIATSALVANLVLIV GVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVG TGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRINKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-116 | 47 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-116 | 47 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-116 | 47 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-116 | 47 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 6e-117 | 47 |
