Gene Information

Name : PCC21_011820 (PCC21_011820)
Accession : YP_006645838.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1355029 - 1355550 bp
Length : 522 bp
Strand : -
Note : -

DNA sequence : 
ATGTACACAGAGGCTGCTAAAAAACCCGACTTACTGTCGCTGATATTTCGCAGCGATTATCGCTGGCTAACGGACAAATT
ACGCCGCCGTATTGCCTACGGCTGTGAAGCGGAAGATGTCGCCTCAGAGGCATTTCTACGTTTGGCCTCGCTACCAAATC
TTGCCAACGTACAGGAACCGCGCGCGATGCTCACCACGCTCGCCAAACGCGTGCTGTATGAAAACTGGCGTCGCCGCGAT
CTGGAAAAAGCCTATCTCACCGCGCTGGCAAGTAAACCTGAATTTCACCATCCGTCGCCGGAAGAGCAACAGCTGTTGAT
GGAAGCGCTGCTCACTATCGATCAGGCGCTGGATGGACTATCCACCAAAGCACGGCAGGCATTTCTGTTCAGCCAGCTTG
ATGGCATGACCTATGCCGACATTGCCGTACAGCTCGATGTCTCCGCCAGTATGGTGAGAAAATATATCGCCAAAGCGCTG
ACCAACTGCTATCTGGCCACGCAGGACAGCAGTGACTTATAG

Protein sequence : 
MYTEAAKKPDLLSLIFRSDYRWLTDKLRRRIAYGCEAEDVASEAFLRLASLPNLANVQEPRAMLTTLAKRVLYENWRRRD
LEKAYLTALASKPEFHHPSPEEQQLLMEALLTIDQALDGLSTKARQAFLFSQLDGMTYADIAVQLDVSASMVRKYIAKAL
TNCYLATQDSSDL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 6e-29 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_011820 YP_006645838.1 RNA polymerase sigma factor VFG1049 Protein 2e-29 46