|
Name : PCC21_032330 (PCC21_032330) Accession : YP_006647889.1 Strain : Pectobacterium carotovorum PCC21 Genome accession: NC_018525 Putative virulence/resistance : Virulence Product : type VI secretion ATPase, ClpV1 family Function : - COG functional category : - COG ID : - EC number : - Position : 3659283 - 3661880 bp Length : 2598 bp Strand : - Note : - DNA sequence : GTGATTCGAATTGAACTGCCGACACTGGTTGAACGACTCAACCCCGTGTGCCGTCATATGCTGGAAGAAGCGGCGGCACT CTGTATTCAACATCAGGGTGCGGAAATCCGTATTGAGCACCTGTTGCTGAAAATGCTGGAAACGCCACTGTGCGATGTAC GCCAGATCCTCAAGCGTGCGGGCGTGGATGCGGATGAGCTGTCTTCGCTGCTGTTGCCTTCCTCCATGGATAAAGAGTTT GATGCGGGCTATCCCTCATTCTCCCCTCTGCTGGTGGAGTGGTTACAGGATAGCTGGCTGCTGGCCTCGGCTGAATTCCA ACATTCACGCCTGCGTAGCGGCATCTTGCTGCTGGTCCTGCTGATGACGCCCAATCGCTATGTGGCTGGCGCAGTATCCC GCCCGCTGGCGCAGATTAACCGTGAGCTTTTACGCCAGCAGTTTGATGAGTGGGTGAAGGATTCGGTGGAAACGGAAGTC GCGGTGCAGTCTGCCACGGCCGAACAGGCTGCTGCGGCGAACACGCAGCTCTCTCGCTATACCCAAAACGTGACGGAATC CGCCCGGCAGGGGCAACTGGATCCGGTGCTGTGCCGCGACCATGAAATCGATCTGATGATCGACATTCTCTCCCGTCGTC GTAAAAACAACCCGATTGTGGTCGGGGAAGCGGGCGTCGGTAAAAGTGCGCTGATCGAAGGGCTGGCGCTACGCATCGTG GCCGGTGCCGTGCCGGAAAGACTGCGGGATGTGGAACTGCTTACGCTCGATTTGGGAGCGATGCAGGCCGGTGCCTCGGT GAAAGGCGAATTTGAGAAACGCTTCAAAGGCGTGATGCAGGAAGTGAAAGATTCACCGCGCCCTATCGTTCTGTTTATCG ATGAAGCGCATACGCTCATCGGCGCGGGCAATCAGGCGGGCGGGCTGGACGTTTCCAACCTGCTCAAGCCTGCACTGGCG CGCGGTGAACTGCGCACTATCGCGGCCACGACCTGGAGCGAATACAAAAAATACGTCGAGAAGGACGCTGCGCTTTCCCG CCGTTTCCAGCTCGTCAAAGTCGGTGAACCGAATGCGGAAGAAGCCACGGTTATCTTGCGTGGGCTGCGCGGTATCTATG AAAAGGCGCACGGTGTCCTGATTGATGAAGATGCGCTTCAGGCGGCGGCACAGCTGTCAGCCCGCTATATCTCCGGTCGC CAACTGCCCGATAAAGCCATCGACGTGCTGGATACGGCCAGCGCGCGCGTGGCGATTAACCTGACGACGCCACCGCGTGC GGTCAGCCAGTTGCAAACCCGCCTGCATCAGCAGGAGATGGAAATTACCCAGCTTGAGCGTCAGGCGCGTATTGGTCTGG GCAATACCGAAGAACGATTAGTCGAACTGCGTGAGGCACGCGAAGCCGGTGCGGCACAACTGGCACAGTTGGAAGCCGAT TGGCAGCAGCAGAAAACGCGGGTTCAGCGCGTGATTGAACTGCGTACAGCGCTGCTGGATGAAGAGCAGTCTGTCGATTT TGATGCGGTGTCAGCCGCGGCGGAACTGGCGGCCTGCGAACAGGCGCTGGAAGCGCTGCAACAGTCCTCGGTACTGGTCT CTCCTCACGTTGATAAAACGCAGATTGCGGCCGTTATTGCCGAGTGGACGGGCGTGCCGCTGAACCGCATCTCACAGAGT GAAATGGATGTCGTCACGCGCCTGCCTGAATTCCTGGGGGATTCAATTAAAGGGCAGCAGTTAGCGATCGCTCAATTGCA TAAACATCTGCTGACCGCGCGTGCGGATCTTCGTCGTCCGGGGCGTCCGCTGGGGGCTTTCCTGTTGGTCGGGCCGAGCG GCGTAGGTAAAACGGAAACCGTGCTCCAGATTGCCGATCTGATGTTTGGCGGACGCAACTATCTGACCACCATCAATATG TCGGAATATCAGGAAAAACATACGGTTTCACGCCTGATCGGTTCGCCGCCGGGCTACGTCGGGTTTGGTGAAGGCGGTGT GTTAACCGAAGCCATCCGCCAGAAACCGTATTCCGTGGTGCTGCTGGATGAGGTAGAGAAGGCGCACCCAGATGTCCTGA ACCTGTTCTATCAGGCGTTTGATAAAGGTGAACTCGCCGATGGCGAAGGCCGGGTGATCGACTGCCGCAACGTGGTGTTC TTCCTGACGTCCAACCTCGGGTTCCAAACGATTGTGAACTACGCCGAGCAGTCGGATGTGTTGCTGGATGCGCTCTATCC CGAACTTGCAGCCTTCTTCAAACCCGCACTCCTGGCGCGTATGGAAGTCATTCCTTACCTGCCGCTGGCGCATGACACCA TGGTTGAGATCGTACAAGGCAAACTGTCGCGTCTGGTGTCCCTGCTGCAACAGCGCTTTGGGGCGGAAGTCATCATTGAG AACGAGGTGCCGGAAGAGATTCTGCGGTTGGCAAACCGCAGCGAAAACGGCGCGCGTATGCTCGAATCGGTAATTGATGG CGCCTTGCTGCCGCCGGTCTCGCTACAGCTGCTGCAACGCATGTCGGCGGGTGAGCCTGTCAGCCGTATTCATTTCCGTG TCGAAGCCGGCCAGTTCCAGACTGAGGTTGAGGGCTGA Protein sequence : MIRIELPTLVERLNPVCRHMLEEAAALCIQHQGAEIRIEHLLLKMLETPLCDVRQILKRAGVDADELSSLLLPSSMDKEF DAGYPSFSPLLVEWLQDSWLLASAEFQHSRLRSGILLLVLLMTPNRYVAGAVSRPLAQINRELLRQQFDEWVKDSVETEV AVQSATAEQAAAANTQLSRYTQNVTESARQGQLDPVLCRDHEIDLMIDILSRRRKNNPIVVGEAGVGKSALIEGLALRIV AGAVPERLRDVELLTLDLGAMQAGASVKGEFEKRFKGVMQEVKDSPRPIVLFIDEAHTLIGAGNQAGGLDVSNLLKPALA RGELRTIAATTWSEYKKYVEKDAALSRRFQLVKVGEPNAEEATVILRGLRGIYEKAHGVLIDEDALQAAAQLSARYISGR QLPDKAIDVLDTASARVAINLTTPPRAVSQLQTRLHQQEMEITQLERQARIGLGNTEERLVELREAREAGAAQLAQLEAD WQQQKTRVQRVIELRTALLDEEQSVDFDAVSAAAELAACEQALEALQQSSVLVSPHVDKTQIAAVIAEWTGVPLNRISQS EMDVVTRLPEFLGDSIKGQQLAIAQLHKHLLTARADLRRPGRPLGAFLLVGPSGVGKTETVLQIADLMFGGRNYLTTINM SEYQEKHTVSRLIGSPPGYVGFGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGELADGEGRVIDCRNVVF FLTSNLGFQTIVNYAEQSDVLLDALYPELAAFFKPALLARMEVIPYLPLAHDTMVEIVQGKLSRLVSLLQQRFGAEVIIE NEVPEEILRLANRSENGARMLESVIDGALLPPVSLQLLQRMSAGEPVSRIHFRVEAGQFQTEVEG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 3e-126 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PCC21_032330 | YP_006647889.1 | type VI secretion ATPase, ClpV1 family | VFG2084 | Protein | 0.0 | 61 |
| PCC21_032330 | YP_006647889.1 | type VI secretion ATPase, ClpV1 family | VFG2076 | Protein | 3e-139 | 41 |
