Gene Information

Name : PCC21_000420 (PCC21_000420)
Accession : YP_006644698.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : ECF family RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 51865 - 52377 bp
Length : 513 bp
Strand : +
Note : -

DNA sequence : 
ATGGTGAGGAAAGCGACGGCCAGCGTTAATGACTTTGCCCAGCAGCTCTATTTCGATCACCACCGCTGGTTGTGTAACTG
GCTGCGCCATAAACTGGACTGCGCTCAGCATGCGGAAGATCTGGCACAGGACACGTTCCTGAGCGTGCTGATGAACCCAG
AACTGCTCACGATTCGCCAGCCGCGCCCGTTTCTGGCTACCGTGGCTCGCCGTTTGGTCGCCAACCATTACCGCCGTAAA
AAGATTGAAGATGCCTATCTGGATGTGTTGAGCACGCAGCCGGATGCCTGTATGCCCTCCCCGGAAACGCGTCTGCTTAC
CCTCGAAATTCTTGAACAGCTTGATGCCGCATTAGACGGCCTGCCTGCGCCGGTCAGGGAAGCGTTCCTGCTGGCGCACC
TCCACGGTATGCGCTACAGCGACATCGCCGAGCGCTTGCGGGTTTCCAGCAGTTCGGTGAAACAGTATTTGCAACGCGCC
AACCTCCAGTGTTTCTTTGCGCTGCCGCTATGA

Protein sequence : 
MVRKATASVNDFAQQLYFDHHRWLCNWLRHKLDCAQHAEDLAQDTFLSVLMNPELLTIRQPRPFLATVARRLVANHYRRK
KIEDAYLDVLSTQPDACMPSPETRLLTLEILEQLDAALDGLPAPVREAFLLAHLHGMRYSDIAERLRVSSSSVKQYLQRA
NLQCFFALPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 8e-35 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_000420 YP_006644698.1 ECF family RNA polymerase sigma factor VFG1049 Protein 3e-35 48