Gene Information

Name : PCC21_007220 (PCC21_007220)
Accession : YP_006645378.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 820763 - 821287 bp
Length : 525 bp
Strand : +
Note : -

DNA sequence :

GTGAAGAGTCCCGCCGCTGTCTGCCCCAATCAGCCTGAAACCTTAACCGTTCAGCAGATTTATCATGACCATCATGCCTG
GTTACAGGCGTGGCTGCGTCGGCGTTTGGGGTGTTCACAGCAGGCTGCGGATCTGGCTCAGGATACGTTTCTACGTTTGA
TCTGCCAACATCAGACCGATCTCATCCGTGAACCGCGTGCCTGGCTAACGACGGTTGCCCACGGGCTAGTGGTAAATCAA
TGGCGACGTAAAGAGATCGAGAATGCCTATCTTCAGGTGCTGGCAGAGCAGGAGTTTACGTTTTCTCCCTCGCTGGAACA
GCAGGCTATGGTGGTTGATGCGCTGATGGCCATCGACCAAATGCTGGCGACGCTGCCGGGTAAAGTGCGTCAGGCATTCT
TGCTCGTGCATCTTGATGGACTGACCTATCGGCAGGTTGCTGAACAATTAGCCGTTTCCGAGCGGATGGTGAAAAAATAT
ATGGCACAGGCAATGCTGAATTGTCTATTGTGTCAGGACTTATGA

Protein sequence :

MKSPAAVCPNQPETLTVQQIYHDHHAWLQAWLRRRLGCSQQAADLAQDTFLRLICQHQTDLIREPRAWLTTVAHGLVVNQ
WRRKEIENAYLQVLAEQEFTFSPSLEQQAMVVDALMAIDQMLATLPGKVRQAFLLVHLDGLTYRQVAEQLAVSERMVKKY
MAQAMLNCLLCQDL

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	1e-31	44

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PCC21_007220	YP_006645378.1	RNA polymerase sigma factor	VFG1049	Protein	4e-32	44