Gene Information

Name : R0052_11570 (R0052_11570)
Accession : YP_006656798.1
Strain : Lactobacillus helveticus R0052
Genome accession: NC_018528
Putative virulence/resistance : Resistance
Product : Macrolide ABC superfamily ATP binding cassette transporter, ATP-binding/permease protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2054433 - 2055134 bp
Length : 702 bp
Strand : +
Note : macrolide ABC transporter ATP-binding/permease; COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGGCTTATATAGAATTGAAAAATAATACTAAAATTTATCAATCTGGGGATACAACTATTTATACCAACAAAGATATTAC
TTTTTCTATTGATAAGGGAGAATTAGTAGTCATTTTGGGCTCTTCAGGAGCTGGCAAGTCAACGTTGCTGAACATTTTAG
ACGGGATGGAACCTAATACAAGCGGTGACGTGATTGTAGCAGGTAAAAATATTGCATCTTATAACGCCAAACAATTAACA
ACTTACCGCAGAAATAATGTAGGTTTTGTCTTTCAATTCTATAATTTAATTCCTAACCTAACCGCAAAAGAGAATGTAGA
ATTGGCAGCGCAAATCGTTCCTGATGCTATGAATCCAGATGAAGCATTAAGAGAAATCGATTTAACTGATCGCGAGCAAA
ACTTTCCTGCTCAATTATCTGGTGGTGAACAGCAACGTGTAGCGATCGCACGTGCTATCGCCAAAAAGCCAGAATTATTA
TTGTGTGATGAACCGACCGGAGCACTGGATTACAAAACTGGTAAACGGATTTTAAAGATTCTGCAAGACATGAGCCGAAA
AAATGGCTCTACTGTACTGATCGTTACTCATAACGCTGCTATTGCCCCAATTGCGGATAAGGTGATTCGTATTCATGATG
GCGGTATTCAGAAGATTGAGACTAATGATCATCCTGCCGATATCAGTAGCATTGAATGGTAG

Protein sequence : 
MAYIELKNNTKIYQSGDTTIYTNKDITFSIDKGELVVILGSSGAGKSTLLNILDGMEPNTSGDVIVAGKNIASYNAKQLT
TYRRNNVGFVFQFYNLIPNLTAKENVELAAQIVPDAMNPDEALREIDLTDREQNFPAQLSGGEQQRVAIARAIAKKPELL
LCDEPTGALDYKTGKRILKILQDMSRKNGSTVLIVTHNAAIAPIADKVIRIHDGGIQKIETNDHPADISSIEW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
R0052_11570 YP_006656798.1 Macrolide ABC superfamily ATP binding cassette transporter, ATP-binding/permease protein NC_012469.1.7685735. Protein 1e-75 66
R0052_11570 YP_006656798.1 Macrolide ABC superfamily ATP binding cassette transporter, ATP-binding/permease protein CP001581.1.gene798.p Protein 5e-44 43
R0052_11570 YP_006656798.1 Macrolide ABC superfamily ATP binding cassette transporter, ATP-binding/permease protein NC_012469.1.7686878. Protein 7e-38 43
R0052_11570 YP_006656798.1 Macrolide ABC superfamily ATP binding cassette transporter, ATP-binding/permease protein CP001581.1.gene598.p Protein 6e-39 41