|
Name : RM11_0675 (RM11_0675) Accession : YP_006665117.1 Strain : Bartonella quintana RM-11 Genome accession: NC_018533 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 848089 - 852240 bp Length : 4152 bp Strand : - Note : - DNA sequence : ATGGCTCAGACCCTAGCAATGACGTCTCAATTCAATGGTCGTAAGCGCGTACGCAAGTTTTTTGGTAAGATTCCTGAAGT GACGGAAATGCCAAATCTTATTGAGGTTCAAAAAGCATCATATGATCAGTTTCTCATGATTGAGGAGCCGAAAGGTGGGC GTCCAGATGAAGGCTTGCAGGCTGTGTTTAAATCGGTATTTCCTATTTCGGATTTTTCCGGTACAGCTATGCTCGAGTTT GTTGGTTATGAATTTGATTTACCAAAATTTGATGTTGAAGAATGCCGTCAACGTGATTTGACTTATGCTGCGCCATTAAA GGTGATATTGCGTTTAATCGTTTTTGATGTTGATGAGGATACTGGTTCGAAAGATATCAAAGATATTAAAGAGCAAGGCG TTTATATGGGCGATATGCCTTTAATGACCACGAATGGTACCTTTATCGTTAATGGTACTGAGCGTGTTATTGTTTCACAG ATGCATCGTTCTCCCGGTGTCTTTTTTGATCATGATAAAGGAAAATCGCATTCATCGGGAAAGTTTCTTTTTGCTGCCCG TGTTATTCCTTATCGTGGTTCTTGGCTTGATATTGAATTTGATGCTAAGGACATCATTTATGCTCGTATTGATCGGCGAC GTAAGATTCCTATTACGAGTCTTTTGATGGCATTAGGTATGGATGCATCAGATATTTTGTCAACTTTTTATAATAAAGTT ACCTATGAACGGGATGGGGATGGATGGCGCATTCCTTATTCTGTTGGTCGCTTTAAAGGAGTGAAGCTCATTTCTGATCT TGTAGATGCAGACAGTGGTGAAGTTGTTGCCGAGGCTGGTAAAAAGCTAACAGTTCGTGCTGCGAAAGCTTTAGCAGAAA AGGGTCTAAAGGCGGTTAAAATCACTGAGGATGATTTATTAGGGTCCTATTTAGCGGAAGATATAGTTAACTACCAGACA GGTGAAATTTACCTTGAAGCTGGTGATGAAATTGATGAAAAAGCATTAAAAATTTTGTTTGATGTTAGTGCTGACCAAAT TAATATTCTTGATATTGATCACATGAATATTGGAGCATATATCCGCAATACTTTAAAGGTGGATAAAAATGAAAGTCAGC AAGATGCGTTGTTTGATATTTATCGAGTGATGCGTCCAGGTGAGCCACCAACAATGGATACAGCAGCAGCTATGTTCCAT TCGTTATTTTTTGATCCAGAACGTTATGATCTTTCGGCTGTTGGACGTGTTAAGATGAATTTACGTATGGATCTTGATTG TCCAGATACGGTTCGCATTTTGCGTCAGGAAGATATTCTTGCTGTTGTTAAAATGTTGGTTGAATTGCGTGATGGTCGTG GTGAAATTGATGATATTGATAATCTTGGCAATCGTCGTGTTCGTTCAGTTGGGGAATTGATGGAAAATCAATATCGCATT GGTTTGCTTCGTATGGAGCGTGCGATAAAAGAGCGTATGTCATCGGTTGAAATTGATACTGTCATGCCCCAGGATTTGAT TAACGCAAAGCCAGCTGCTGCAGCGGTTCGTGAATTTTTTGGGTCTTCGCAATTGTCGCAGTTTATGGACCAAACCAATC CATTGTCCGAAATTACCCATAAGCGCCGTCTTTCTGCTCTTGGTCCAGGCGGCTTGACACGAGAACGTGCAGGCTTTGAA GTTCGTGACGTGCATCCTACGCATTATGGTCGTATTTGTCCGATTGAAACGCCGGAAGGCCCTAATATTGGTCTGATTAA TTCCTTAGCAACTTTTGCGCGGGTTAATAAATATGGTTTTATTGAAAGTCCATATCGCAAAATTATTGATGGTAAAGTGA CAACGGAAGTTATTTATCTTTCTGCTATGGAAGAGTCAAAGCATTATGTGGCTCAGGCGAATTCTTCATTAGACGCTGAG GGACGTTTTACAGACGAATTTGTTGTTTGCCGTCATGCGGGGGAAGTTTTGATGGCGCCGCGAGATCATGTCGATTTGAT GGATGTTTCACCAAAGCAGTTAGTTTCAGTAGCTGCTGCTCTCATTCCATTTTTGGAAAATGATGATGCAAATCGTGCGT TGATGGGATCGAATATGCAGCGTCAAGCCGTTCCGCTTGTACGCGCTGAAGCACCATTTGTTGGTACGGGTATGGAATCA ATAGTAGCTCGCGATTCAGGGGCTGCTGTTAGTGCAAAGCGTGGTGGTATTGTTGATCAAGTTGATGCAACCCGTATTGT TATTCGTGCGACAGAAGATTTAGATCCTTCAAAGTCTGGGGTTGATATTTACCGTTTACAGAAATTTCAACGTTCCAATC AATCCACTTGTATTAATCAGCGTCCTCTCGTGCATGTTGGTGATCGGGTAGAGAAGGGAAATATCATTGCGGATGGTCCG TCTACGGATCTTGGTGATCTAGCTCTTGGTCGGAATGTTCTTGTGGCATTTATGCCTTGGAATGGGTACAATTATGAAGA TTCCATTTTGCTTTCCGAGCGTATCGTTGCCGATGATGTCTTTACTTCGATTCATATTGAGGAGTTTGAGGTTGCTGCAC GTGATACAAAGCTTGGTCCTGAAGAAATTACGCGTGATATTCCAAATGTTGCGGAAGAGTCCTTAAGGAATCTTGATGAG GCTGGAATTATCTATATTGGTGCTGAAGTTCAGCCTGGTGATATTTTGGTTGGTAAAATTACACCAAAGGGTGAGAGTCC TATGACACCGGAAGAGAAACTTCTGCGTGCAATTTTTGGGGAAAAGGCTTCAGATGTTCGTGATACTTCTATGCGAATGC CTCCTGGGGCTTTTGGGACTGTTGTTGAAGTTCGTGTTTTTAACCGCCATGGTGTGGAAAAGGATGAACGTGCAATGGCC ATTGAACGTGAGGAAATTGAACGTTTAGCTAAAGATCGTGATGATGAACAATCAATCCTTGATCGTAATGTTTATGCGCG TCTTACTGATATGTTGACAGGCAAAATTGCTGTAGAAGGTCCAAAAGGCTTTTCGAAAGGCAAGAAGCTTGATAATACGA TAATGGGTCATTATCCACGATCGCAGTGGTGGCAATTTACCGTTGAGGATGAAAAGCTTCAAAGTGAAATTGAGGCTTTG CGCAAGCAGTATGATGAATCAAAAGAAGCGTTGCAACGTCGCTTTATGGATAAAGTTGAGAAGGTCCAGAGAGGTGATGA AATGCCTCCTGGTGTCATGAAGATGGTGAAGGTTTTTGTGGCTGTAAAGCGCAAAATCCAACCAGGTGATAAGATGGCGG GACGTCATGGTAATAAGGGTGTTGTATCACGTATTCTTCCAATAGAAGATATGCCATTTCTTGAAGATGGAACCCATGCT GATATCGTCTTGAATCCACTTGGTGTGCCTAGTCGTATGAATGTTGGTCAAATTCTTGAGACACATCTTGGATGGGCATG TGCAGGTATGGGTAAGAAGATTGGCGATTTGGTGGATTTGTATCAAGAAACAGGGGATATATTTCCTTTGCGTCAGCGTA TCGAGAATCTTATGCCTGATAATGATCATAATGAACCAGTACGTCAGTACGATAATGAGAGCCTTTACAAATTGGCGCTA CAGATGAGGAAAGGCGTTTCAATTGCAACACCTGTTTTTGATGGAGCACATGAAGCTGATATCAACATGATGCTCGAAGA TGCGGACTTGGATAGCTCAGGGCAGGTTGTGCTTTATGATGGTCGTACTGGAGAGCCTTTTGATCGTCCGGTGACGGTGG GGTATATTTATATGTTGAAATTGCATCACCTTGTTGATGATAAGATTCATGCGCGTTCGATTGGTCCGTATTCACTTGTT ACACAGCAGCCATTAGGTGGTAAGGCACAATTTGGTGGTCAGCGTTTTGGTGAAATGGAGGTTTGGGCACTTGAAGCTTA CGGTGCAGCATATACTTTGCAGGAGATGCTGACAGTGAAATCGGATGATGTGGCTGGTCGAACAAAAGTTTATGAGGCGA TTGTGCGCGGTGACGATACATTTGAGGCAGGTATACCCGAGAGCTTTAATGTGTTGGTGAAAGAGATGCGTTCACTTGCT CTTAATGTAGAACTTGATGATGCACGTGAGCTTATCGCACAACGAGTATTGTCTGATACAACAGAACAATAA Protein sequence : MAQTLAMTSQFNGRKRVRKFFGKIPEVTEMPNLIEVQKASYDQFLMIEEPKGGRPDEGLQAVFKSVFPISDFSGTAMLEF VGYEFDLPKFDVEECRQRDLTYAAPLKVILRLIVFDVDEDTGSKDIKDIKEQGVYMGDMPLMTTNGTFIVNGTERVIVSQ MHRSPGVFFDHDKGKSHSSGKFLFAARVIPYRGSWLDIEFDAKDIIYARIDRRRKIPITSLLMALGMDASDILSTFYNKV TYERDGDGWRIPYSVGRFKGVKLISDLVDADSGEVVAEAGKKLTVRAAKALAEKGLKAVKITEDDLLGSYLAEDIVNYQT GEIYLEAGDEIDEKALKILFDVSADQINILDIDHMNIGAYIRNTLKVDKNESQQDALFDIYRVMRPGEPPTMDTAAAMFH SLFFDPERYDLSAVGRVKMNLRMDLDCPDTVRILRQEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRI GLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFE VRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIIDGKVTTEVIYLSAMEESKHYVAQANSSLDAE GRFTDEFVVCRHAGEVLMAPRDHVDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMES IVARDSGAAVSAKRGGIVDQVDATRIVIRATEDLDPSKSGVDIYRLQKFQRSNQSTCINQRPLVHVGDRVEKGNIIADGP STDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVAEESLRNLDE AGIIYIGAEVQPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGAFGTVVEVRVFNRHGVEKDERAMA IEREEIERLAKDRDDEQSILDRNVYARLTDMLTGKIAVEGPKGFSKGKKLDNTIMGHYPRSQWWQFTVEDEKLQSEIEAL RKQYDESKEALQRRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPGDKMAGRHGNKGVVSRILPIEDMPFLEDGTHA DIVLNPLGVPSRMNVGQILETHLGWACAGMGKKIGDLVDLYQETGDIFPLRQRIENLMPDNDHNEPVRQYDNESLYKLAL QMRKGVSIATPVFDGAHEADINMMLEDADLDSSGQVVLYDGRTGEPFDRPVTVGYIYMLKLHHLVDDKIHARSIGPYSLV TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLA LNVELDDARELIAQRVLSDTTEQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 57 |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RM11_0675 | YP_006665117.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 59 |
| RM11_0675 | YP_006665117.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 59 |
| RM11_0675 | YP_006665117.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 58 |
| RM11_0675 | YP_006665117.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 58 |
| RM11_0675 | YP_006665117.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 58 |
| RM11_0675 | YP_006665117.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 58 |
| RM11_0675 | YP_006665117.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 58 |
| RM11_0675 | YP_006665117.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 58 |
| RM11_0675 | YP_006665117.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 58 |
| RM11_0675 | YP_006665117.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 57 |
| RM11_0675 | YP_006665117.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 57 |
| RM11_0675 | YP_006665117.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 57 |
| RM11_0675 | YP_006665117.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 57 |
| RM11_0675 | YP_006665117.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 57 |
| RM11_0675 | YP_006665117.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 57 |
| RM11_0675 | YP_006665117.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 57 |
| RM11_0675 | YP_006665117.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 56 |
