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Name : rpoB (CAHE_0338) Accession : YP_006705535.1 Strain : Cardinium endosymbiont cEper1 Genome accession: NC_018605 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 342010 - 345849 bp Length : 3840 bp Strand : + Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2068078, 377281, 6266829, 7011900, 91071589, 92316970,93094280, 9893021, 99255760; Product type e : enzyme DNA sequence : ATGCCTTCTGTTGATGCTCCCGCAAACTACACTGATTTGCTTGAAATCCAGTTGCAATCTTTTAGAGACTTTTTTCAACT CGGTGTTAGTCCAGAAAATAGAATAAGTGAAGGGCTTTATAAGGTTTTTATGGAGCATTTTCCTATTGAAGATTCTAAGC GAAACTATATTCTAGAGTTTATTGACTACAATTTAGAGCTTCCCCAATATACGCCTCGGGAGTGTATTGAACGGGGCTTG ACCTATGATGTACCTTTGAAAGCAAAATTACGCTTGTTACAAAATGACGAACATACTGGGAAATATGAAGGCGTTGAACA AGAGGTTTTTTTAGGTAATATACCTTATATGACCGATCAAGGTTCTTTTATTTTAAGTGGTGTAGAGCGTGTGGTGGTTT CTCAAGTGCATAAGTCTTCTGGTATTTTCTTTTTTCAAAATAAGCACATTAGTGGTTCCAATGTTTATGCTGCTAAGGTA GTGCCTGCCAAAGGTGTTTGGATTGAATTTTCCGTTGATATTAATTCAGTCATGTATATCTATTTAGATAGGAAAAAGAA AATACCCATTACTACTATGTTGCGTGCCATTGGGTATAGTAGTGACAAAGATATTTTAGGTATATTTGGTCTTGCCGATG AGGTAGAGGCAAGTGGTCCAGGATTGGAAAAATATATAGGCCGTAAATTAGCCGCTCGGGTTTTAAAAAGTACTGTAGAG CATTTTATAGATGAAGAAACGGGCGAAAAATATGTTTCTCCCAGACATGAAGTTCTTGTAGAGCGGAATACAGTATTAGA TGAAGCAGTGATAGAAGTCATTTTATCTTCTGGTGTTCCCTCTGTTATTTTGCATCATTCAGAAGCAGCTCCTGCAGACT ACCATCTTATATATAACACCTTTGGGAAAGATAGTACCAATGATACGAAGGAAGCAATAGAGCAAATTTACCGTCAGTTG CGTAATGCAGAGGCACCTGATGAGCAGACCGCCCGTGAAACGGTAGAAAGCCTTTTTTTTAGTAGTAAGCGCTATACGTT GGGTGAAGTAGGTCGTTATCGAATCAATAAAAAATTAAATCTAGATATCCCATTAGAGACTTCTGTTTTGACCCAAGAAG ATATCATACAAATTATTCATTATCTGATTAAGGTAGTCAATGGTAAGGCAGAAGTAGATGATATTGATCATTTAAGCAAT CGCCGCGTACGTTCTGTTGGGGAGCAACTGTTTACCCAGTTTGGCATAGGGCTTTCTCGTTTGGCCAGAACCATTCGTGA ACGCATTAACATTAGAGATAATGAGCTATTTAAGCCTGCAGACCTAATTAATGCACGTACCCTTTCTTCAGTGATTAGTT CTTTCTTTGGTATCAATCCACTTTCTCAGTTAATTGATCAAGTCAACCCATTGGCAGAAATTACCCATAAGCGTCGCGTA TCCGCATTAGGACCTGGCGGACTTTCTAGAGATCGTGCTGGTTTTGAGGTTCGTGACGTCCACTATTCTCATTATGGTAG GTTGTGTACCATTGAGACACCGGAAGGTATGAATATTGGTTTGATTTCTTCACTTTGCATGTATGCACGTGTCAACAATA TGGGCTTTATCGAAACACCTTATAGGCGGGTAGAGGATGGTAAAGTTGACCTTAGTGGTGCCATTTGTTACCTTAGTGCT GCAGAAGAAGAACATGCTAATTTTGCTCCAGCTAATGTACAGTTAGATGCAAATGGTGTCATCTTAGATAACCGAGTCAA AGTTCGAAATGGAGATGAGTATCCTTTGGTAAAACCAGAGCAGGTTAATTATATGGATGTTTCGAGCAGTCAGATTGCTT CAGTTGCTGCTTCTTTGATTCCGTTTTTGGAGCACAATGATGCCAGTCGTGCCTTGATGGGATCTAACATGCAGCGTCAG GCTGTTCCTTTGGTAAGGCCAGATGTGCCTATTGTTTGTACAGGTGTAGAAAAAAGAGTCGCTAAAGAGTTTAGGGGGTT ACCTACGGCAGAGGGTAGTGGTTTGGTTACTTATGTGGATGGTAGAAAAATTGTGGTTCAGTATGATCGTTCTGAAGAAG AAGCGCTCGTTGCCTTTGATGAAGCCTCTGTAACCTATTCTATGGATAAATTTAGAGGTACCAACCGCAGTACTTGCATT AACCTATCGCCAATTGTTGCTAAAGGCAGTCGTGTAGAAAAAGGTCAGGTCCTTTGTGAAGGATATGCCACTAAAAATGC AGAGTTGGCCCTGGGTAAAAATTTAAAAGTAGCCTTCTTATCTTGGAAAGGATATACCTTTGAAGATGGTATTGTAATTT CTGAACGTATTGTACGGGATGGCGTTTTTACTTCTATTCATATCAAGGAGTTTATTTTGGAAGTAAAGGATACAAAATTT GGTGCAGAAGAGTTGACCAATGAAATTCCAAATGTTAGTGAAGAAGCCATTTCCAAGTTAGGTATTGATGGTATTGTTAA AGTAGGTACAGAAGTTAAAGAAGGTGATATCTTAATTGGTAAAATTACCCCAAAGGGAGAGATAGATGCGACGCCAGAAG CAAGGCTTTTAAAGGCTATTTTTGGTGATAAAGCAGGCGATGTAAAAAATACCTCTTTAAAAGTGCCATCTGGTATGGAA GGTATTGTGATCGATACTAAAATATTCTCTAGTCCTGAAAGAAATAAAGAAAGTAAGCAAAAAGTCAAAAAAGAGCTGGA GTTATTAAAAAAAGCACATGCTAAAAAATTATTAAAATTGCGTGATATAGCTATTCAAAAGTTATCGCTGGTTTTAGATG GCGTGGTTACCAATGGTATTTATCACCAATTTGGTGATGAGATTATTGCAGAAGGTACGAAGCTTACAGCTCCACTTATT GCTGAAAAGCTCTTTCCTCCTAAAAATATTTACCGTGATGAGTCGCTTTATAATATTCCAGCAGAAGCCAATCTAGTTGG AGACCTTGTATTCAGTAATTGGACCCCTGACCCATCTAAAAATCATCTCGTCCAGCATATTTTAGGCAACTATATTAAAA AATGTACCGCTTCCATTGTACGTTTTAAGCGTGAAAGATTTACACTAGAAGCGGGAGATGGGCTACCCAAAGGGGTTGTA AAAGTAGCTAAAGTCTATATTGCAGAAAAAAGAAAGCTCAAGGTAGGTGATAAAATGTCTGGAAGACATGGTAACAAAGG TATTGTTTGTAAGATTGTACCCCAAGAAGATATGCCATTCTTAGCAGATGGTACACCAGTAGATGTGGTATTGAGTCCAC TTGGATTGCCTTCTCGTATGAATTTAGGGCAGTTATATGAAACTGTGCTAGGATGGGCTGGTGAGCAATTAGGTAAACGG TATGTCAATCCTATTTTTGAAGGTATGACCTTAGATCAGATTTCCAGTGAATTACAACAAGCTGGCTTACCTGCTTTTGG TAAAACAACCGTTTATGATGGAGGAACAGGTATGCCATTTAATCAAAGCGTTACCGTTGGAGTCGTTTATTTGCTCAAGC TTGCTCATTTAGTAGATGATAAAATGCATGCCCGTTCTACAGGTCCTTATTCTTTAATTACGCAGCAACCATTAGGTGGT AAAGCCCAATTTGGTGGACAACGATTTGGTGAAATGGAAGTATGGGCATTAGAAGCCTATGGAGCTGCTTATACATTACA AGAAATGCTCAATACTAAATCAGATGATGTGGTTGGTAGATCTAAAGCCTATGAAGCAATCGTTAAAGGCAATAATATCC CAAGGCCCAATTTATCAGAATCATTTAATGTGTTGATGCATGAATTAAGGGGGCTAGGGCTTGAAATTACGCTTGTATAA Protein sequence : MPSVDAPANYTDLLEIQLQSFRDFFQLGVSPENRISEGLYKVFMEHFPIEDSKRNYILEFIDYNLELPQYTPRECIERGL TYDVPLKAKLRLLQNDEHTGKYEGVEQEVFLGNIPYMTDQGSFILSGVERVVVSQVHKSSGIFFFQNKHISGSNVYAAKV VPAKGVWIEFSVDINSVMYIYLDRKKKIPITTMLRAIGYSSDKDILGIFGLADEVEASGPGLEKYIGRKLAARVLKSTVE HFIDEETGEKYVSPRHEVLVERNTVLDEAVIEVILSSGVPSVILHHSEAAPADYHLIYNTFGKDSTNDTKEAIEQIYRQL RNAEAPDEQTARETVESLFFSSKRYTLGEVGRYRINKKLNLDIPLETSVLTQEDIIQIIHYLIKVVNGKAEVDDIDHLSN RRVRSVGEQLFTQFGIGLSRLARTIRERINIRDNELFKPADLINARTLSSVISSFFGINPLSQLIDQVNPLAEITHKRRV SALGPGGLSRDRAGFEVRDVHYSHYGRLCTIETPEGMNIGLISSLCMYARVNNMGFIETPYRRVEDGKVDLSGAICYLSA AEEEHANFAPANVQLDANGVILDNRVKVRNGDEYPLVKPEQVNYMDVSSSQIASVAASLIPFLEHNDASRALMGSNMQRQ AVPLVRPDVPIVCTGVEKRVAKEFRGLPTAEGSGLVTYVDGRKIVVQYDRSEEEALVAFDEASVTYSMDKFRGTNRSTCI NLSPIVAKGSRVEKGQVLCEGYATKNAELALGKNLKVAFLSWKGYTFEDGIVISERIVRDGVFTSIHIKEFILEVKDTKF GAEELTNEIPNVSEEAISKLGIDGIVKVGTEVKEGDILIGKITPKGEIDATPEARLLKAIFGDKAGDVKNTSLKVPSGME GIVIDTKIFSSPERNKESKQKVKKELELLKKAHAKKLLKLRDIAIQKLSLVLDGVVTNGIYHQFGDEIIAEGTKLTAPLI AEKLFPPKNIYRDESLYNIPAEANLVGDLVFSNWTPDPSKNHLVQHILGNYIKKCTASIVRFKRERFTLEAGDGLPKGVV KVAKVYIAEKRKLKVGDKMSGRHGNKGIVCKIVPQEDMPFLADGTPVDVVLSPLGLPSRMNLGQLYETVLGWAGEQLGKR YVNPIFEGMTLDQISSELQQAGLPAFGKTTVYDGGTGMPFNQSVTVGVVYLLKLAHLVDDKMHARSTGPYSLITQQPLGG KAQFGGQRFGEMEVWALEAYGAAYTLQEMLNTKSDDVVGRSKAYEAIVKGNNIPRPNLSESFNVLMHELRGLGLEITLV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 43 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_006705535.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 43 |
| rpoB | YP_006705535.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 43 |
| rpoB | YP_006705535.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 43 |
| rpoB | YP_006705535.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 43 |
| rpoB | YP_006705535.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 43 |
| rpoB | YP_006705535.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 43 |
| rpoB | YP_006705535.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 42 |
| rpoB | YP_006705535.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 42 |
