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Name : HIMB5_00007770 (HIMB5_00007770) Accession : YP_006756711.1 Strain : alpha proteobacterium HIMB5 HIMB5 Genome accession: NC_018643 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 696458 - 700546 bp Length : 4089 bp Strand : - Note : PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subuni DNA sequence : ATGCAATTATCTTTTACTGAAAAAAAAAATATTAGAAAAAGTTTTGGAAAATTAAAAGAGGGATTATCAATTCCCAATCT AATAGAGGTTCAAAAGAACTCTTACAAAGAATTAACTGACTTTAAAGAAGAAGCAGGTGATTTAACAAAAGGTTTCGATA GAGTATTCAAAAGTATATTTCCAATTGAAGATTTAAACGATAAAGCAACTTTAGAATATGTTTCATATAGATTAGAGAAA CCAAAATTTGATGTTGAAGAATGTATAGCTAGAGGTCTAACATATTCATCAGCTTTAAAATGTACTCTTAGACTTGTGGT TTATGAAATAGACCAAGAAAATAATACTAAAGATATATTATCAGCAAAAGAACAAGAAGTTTATATGGGCGATGTTCCAA TGATGACTAATAGCGGAACATTTATTACAAATGGAGTTCAAAGAGTTGTAGTTAACCAAATGCATAGAAGTCCTGGTGTA TTTTTTGATCACGACAAAGGAAAAACTCATGCAAGTGGTAAATTACTATTTAACTGTAGAGTTATTCCGAATAGAGGTTC ATGGTTAGACTTTGAGTTTGATGTAAAAGATTTCTTATACTTTAAGATAGACCGAAAAAAGAAAATTTTAGCTTCAACAT TATTACTAGCTCTTGGTTATACAAAATTAGAAATTGCAAATGAGTTTTATGAAAGTGAAAATTATGTTTATGACTCGAAA TCATATAAATGGAAAACAAAGTTTAATCCAGAAAATTATAAAGCTAAAAATTTTTCAGAAGAAGTAATTGATGCAAAAAC TGGCAAGGTAGTTATCAAGCCTGGTGATAAAATTAATTTTTTAAATGCAAAAAAATTAGCTAATGAAGGTTTAAAAGATA TATTTGTATCTAAAGAATCTTTGTATGGCAAATTTTTACACACTGATATCAAAGTAAGTGAAGAAGAAGAAGGTACGTTT AAAATTGGTACTGAATTGAACGATACAATTATCGAAAAAATTTTGGAGGCAAATATTCATACAATCAAAATATCTACAAC AAATGCGATCAATAAAGGTCCATATTTATTAACAACAATCTTAAATGATAAAAATAATACTAAAGACGAAGCTATTACTG AGATCTATAAAATGTTAAGACCAGGTGAGCCACCTACAATTGAAATAGCAACTCAAATTTTTAACAATCTATTCTTTAGT TCAGATAGGTATGATTTGTCTGATGTTGGAAGAGTAAAAATGAATTCAAGATTAAGCCTAGATTGCTCTGATAAAATAAC TATTTTAAGAAATGACGACATCATTTCTATAATTCACAAAATGTTAGATTTAAGAGATGGCAAAGATGATGTTGATGATA TTGATCACCTAGGCAATCGAAGAGTTAGATCTGTTGGTGAATTAGTTGAAAATCAAGCGAGGATAGGTGTTTACAGAATG GAGAGAGCAATTAAAGAAAAAATGACTACTCTTGATGTTGAATCTGCAATGCCTCAAGACTTAATAAACGCTAAACCACT AACTGTTTCTCTAAAAGATTTTTTTGCAAGTTCTCAATTATCTCAGTTCATGGATCAAACTAATCCATTGTCAGAGATTA CACATAAAAGAAGAGTTTCTGCTTTAGGGCCAGGTGGTCTTACAAGAGAAAGAGCTGGTTTTGAAGTTAGGGATGTACAC CCAACACATTATGGAAGAATTTGTCCGATCGAAACTCCAGAAGGACCTAACATTGGGTTAATTAACAGTTTATCTACTTA TGCTAAAATTAATAAGTATGGTTTTATAGAAAGCCCTTACAAACGAGTTAAAGACGGCGTGGTGCAAGACAAAGTTGAAT ACTTATCTGCAATGGAAGAAACTAAATATACAATCGCTCAAGCAAACACTAAATTAGATAAAAATGGAAAAATCATTGAA GAACTTGTGTCTTGCAGACAAAACTTAAACTTTCTATTAGCTAAACCAGATACTATCGATTACATCGACGTCTCACCTAA ACAATTAGTTTCAGTTGCAGCTTCATTAATCCCATTTTTAGAAAATGATGATGCCAACAGAGCTCTTATGGGTTCTAACA TGATGAGACAAGCGGTTCCTTTATTAAAACCAGAATCGCCTTTGGTTGGTACAGGTATTGAAAGTGATGTTGCTTTGGAT TCAGGTGTTACTATTGTAGCTAAAAGAGATGGGATTGTTGATAAGATTGATGGTAAAAGAATTGTAATTAAAGCTACAGA GGAAACTGACTTTAGTAAATCTGGAGTAGATATTTACAATCTTCAAAAATTTAAAAGATCAAACCAAAATACATGTATTA ACCAGAGACCTTTAGTGCGTGTAGGAGATAAAGTTAAATCTGGTGATATTATTGCAGATGGACCATCAACTAGATTAGGT GAATTAGCTCTAGGTAAGAATGTAACTGTAGCGTTTATGCCATGGCAGGGTTACAATTTTGAAGACTCTATTTTGATTTC AGAAAGATGTGTAACAGACGACGTATTTACCTCAGTTCATATTGTTGAGTATGAAATTATGGCAAGAGACACAAAACTTG GTGAAGAAGAGATTACAAGAGATATTCCAAATGTAAATGAAGATGCGCTTAAAAATCTAGATGAGTCAGGAATAGTTTAT ATTGGTGCTGAAGTTAATGCTGGAGATATTTTGGTTGGAAAAGTGACACCTAAAGGAGACTCAGCCTCTGGTCCTGAGGA GAAATTACTAAGATCAATATTTGGTGAAAAAGCAATCGATGTAACTGACACTTCTTTAAGAATGTCTAGAGGAAGCAGTG GAACAGTTGTTGATGTAAGAGTATTTAATAGACATGGAATTGAAAAAGACGAAAGATCTATAACTATTGAAAGAGCAGAA ATTGAACAAGTTCAACAAGACAAAATTGTTGAAGAAGAGATTTTGGAGAGAAGTATAAAACAAAGAGCTACACAAATTTT ATCAGGTTCTAAATTAAGTAAAAAAGTTAAAGATATAACAGAGGGTAAAGAACTTAATGCAGAATTAATAAATAGTTTAA GTATAAATGATATTTTTAAAATCAGTGTTGGTAATGTTCAAGATGAGTCAACACTTGCTCAGTTAAAAGATCAATACACT TCTGCCAAACAAGATATTACAGAAAGATTTGAAGACAAGGTTTTAAAAATCAGAAGTGGTGATGATTTACTTCCTAGTGT TATGAAAATGGTTAAAGTTTTTGTGGCTATCAAGAGAAGATTAAGACCAGGAGATAAAATGTCTGGAAGACATGGAAACA AAGGGGTTGTCAGTAAAATTGTTCCTGTTGAGGATATGCCATATAGAGAAGATGGAAGACCGGTTGATATAGTTTTAAAT CCTCTTGGTGTTCCTAGTAGAATGAATGTGGGCCAAATTTTAGAAACACACTTAGGGTGGGCGTGCAAAGAATTTGGGGA AGAAATAAAAAAATTAATTAATGAAAATCAGAAGAAAATTGAGAAAACTGAAAAAATTTCTAAATTTTTAAAATCCGTAT ATGGCGATGAAGCATATTCTGAAAAAGTTGAAAAATTGAACAAAACAGAATTTAAAGATCTTTGTGAAAATCTTCAAAAT GGGATAGCGATATCAACACCAGTTTTTGATGGAGCAAAAGAACAAAACGTTACTGAAATGTTAGAACTTGCTAACCTACC AGGATCAGGTCAAACTTATTTGTGGGATGGAAGAACAGGTGAAAAGTTTGATAGACCTGTAACTGTTGGAATAATTTATA TGCTAAAATTACATCATTTAGTTGAAGATAAAATTCATGCTAGATCGACAGGTCCTTATAGTTTAGTTACTCAACAACCT CTTGGAGGTAAGGCACAATTAGGTGGCCAAAGATTTGGTGAAATGGAAGTTTGGGCTTTAGAAGCTTATGGAGCCTCATA TACTTTACAAGAAATACTAACTGTTAAATCTGACGATGTAGCAGGAAGGGTGAAAGTTTACGAGACAATTGTGAAAGGTG AAGAGAATTTTGAGTCAGGTATTCCTGAGTCATTCAACGTATTAGTAAAAGAAATAAAATCTTTAGCATTAAATGTGGAG TTAAATTAA Protein sequence : MQLSFTEKKNIRKSFGKLKEGLSIPNLIEVQKNSYKELTDFKEEAGDLTKGFDRVFKSIFPIEDLNDKATLEYVSYRLEK PKFDVEECIARGLTYSSALKCTLRLVVYEIDQENNTKDILSAKEQEVYMGDVPMMTNSGTFITNGVQRVVVNQMHRSPGV FFDHDKGKTHASGKLLFNCRVIPNRGSWLDFEFDVKDFLYFKIDRKKKILASTLLLALGYTKLEIANEFYESENYVYDSK SYKWKTKFNPENYKAKNFSEEVIDAKTGKVVIKPGDKINFLNAKKLANEGLKDIFVSKESLYGKFLHTDIKVSEEEEGTF KIGTELNDTIIEKILEANIHTIKISTTNAINKGPYLLTTILNDKNNTKDEAITEIYKMLRPGEPPTIEIATQIFNNLFFS SDRYDLSDVGRVKMNSRLSLDCSDKITILRNDDIISIIHKMLDLRDGKDDVDDIDHLGNRRVRSVGELVENQARIGVYRM ERAIKEKMTTLDVESAMPQDLINAKPLTVSLKDFFASSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVH PTHYGRICPIETPEGPNIGLINSLSTYAKINKYGFIESPYKRVKDGVVQDKVEYLSAMEETKYTIAQANTKLDKNGKIIE ELVSCRQNLNFLLAKPDTIDYIDVSPKQLVSVAASLIPFLENDDANRALMGSNMMRQAVPLLKPESPLVGTGIESDVALD SGVTIVAKRDGIVDKIDGKRIVIKATEETDFSKSGVDIYNLQKFKRSNQNTCINQRPLVRVGDKVKSGDIIADGPSTRLG ELALGKNVTVAFMPWQGYNFEDSILISERCVTDDVFTSVHIVEYEIMARDTKLGEEEITRDIPNVNEDALKNLDESGIVY IGAEVNAGDILVGKVTPKGDSASGPEEKLLRSIFGEKAIDVTDTSLRMSRGSSGTVVDVRVFNRHGIEKDERSITIERAE IEQVQQDKIVEEEILERSIKQRATQILSGSKLSKKVKDITEGKELNAELINSLSINDIFKISVGNVQDESTLAQLKDQYT SAKQDITERFEDKVLKIRSGDDLLPSVMKMVKVFVAIKRRLRPGDKMSGRHGNKGVVSKIVPVEDMPYREDGRPVDIVLN PLGVPSRMNVGQILETHLGWACKEFGEEIKKLINENQKKIEKTEKISKFLKSVYGDEAYSEKVEKLNKTEFKDLCENLQN GIAISTPVFDGAKEQNVTEMLELANLPGSGQTYLWDGRTGEKFDRPVTVGIIYMLKLHHLVEDKIHARSTGPYSLVTQQP LGGKAQLGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVAGRVKVYETIVKGEENFESGIPESFNVLVKEIKSLALNVE LN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 55 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HIMB5_00007770 | YP_006756711.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 56 |
| HIMB5_00007770 | YP_006756711.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 56 |
| HIMB5_00007770 | YP_006756711.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 56 |
| HIMB5_00007770 | YP_006756711.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 56 |
| HIMB5_00007770 | YP_006756711.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 56 |
| HIMB5_00007770 | YP_006756711.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 56 |
| HIMB5_00007770 | YP_006756711.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 55 |
| HIMB5_00007770 | YP_006756711.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 55 |
| HIMB5_00007770 | YP_006756711.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 55 |
| HIMB5_00007770 | YP_006756711.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 55 |
| HIMB5_00007770 | YP_006756711.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 55 |
| HIMB5_00007770 | YP_006756711.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 55 |
| HIMB5_00007770 | YP_006756711.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 55 |
| HIMB5_00007770 | YP_006756711.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 55 |
| HIMB5_00007770 | YP_006756711.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 54 |
| HIMB5_00007770 | YP_006756711.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 54 |
| HIMB5_00007770 | YP_006756711.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 54 |
