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Name : HIMB59_00010060 (HIMB59_00010060) Accession : YP_006758370.1 Strain : alpha proteobacterium HIMB59 HIMB59 Genome accession: NC_018644 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 920417 - 924613 bp Length : 4197 bp Strand : + Note : PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subuni DNA sequence : ATGCCACTTAGCTTTACTGAAAAAAAACGTATTCGCTATTCATTTGGTAAAATCGGTAAAACGATTGAAGTACCAAATTT AGTTGATATACAGAAAATCTCTTTTGATAAGTTCCTCCAGTTAGGAAAATCAGTTGAGGAACGCTCAAATACTGGACTGC AAGAAGTCTTTAATTCTGTCTTTCCCATTAAAGACTATGCAGGTAAATCTGAACTTCATTATATTGATTATTATCTTGAT AATCCTAAATACGATGTAGATGAATGTAGAAGAAAAGGTTTAACATTCTCAGCATCTTTAATGGTCACTTTTCGACTAAT TATTTGGGATCTTAACGAGGAAACTGGTGAAAAGTCACTTAGAGACATTAAAGAACAAGTAGTATACTTAGGTGATCTTC CACTTATGACAAACAATGGTACTTTTGTTGTAAATGGAACTGAAAGAGTTGTTGTAAGTCAATTACACCGTTCTCCTGGT GTTTTCTTTGATCATGATGAAGGTAAAACTCATGCTAGTGGAAAAGTACTCTATAACGCTAGGATAATTCCTTATAGAGG ATCTTGGTTAGATTTTGAATTTGACCACAAAGATAACCTATTTTTTAGAATAGATAGAAAAAAGAAAATGATTTCTACTA CTATTCTTCAAGCATTACCTTCAAAAGCATCAGAAAAATATCTAGAGGAATGTCAGCAAAACAAAGTTGATCCAGACATA TACAAAGTATCTGGTATGACTTCTGAGGAAATTTTAACTTATTTTTATGAAACTTTTACTTTCAAGAAGCAAAAAGATGG CTGGGTGGTAAATTTAGATTTAGATAAATTTAAATATAAAAATCTTCCTTTTAACCTAGTTGACCCAACTTCTAAAGAAA TTGTGGCTCATAAGGATGTAAAGCTATCATTAAAACTTTTAAAAGAAATTAAAGATAAAAAAGTATCAAAATTCTTTTTC GCTGAAGAAGATCTTTATGGTTTTTACTTATCTAATGACCTAGTCAACTATGATAATGGATTAGTTTATGCTGAAGCTGG GACTTTACTAAGTAAAGAATTCTTTGAAAGATTAAATGAACTTTCAATTGATCAGTTTTCAGTAATTAATGCAAATCAAG CAACTGGTAATTTAGGTATAATCAATTCTCTTGTTGCCGATAAAAACAATTCTAGAGAAGAAGCTCTTTTTGATATCTTT AAAATATTAAGACCTGGCGAACCACCGACTCTCGAGGCAAGTAATTATTTATTTCAAAATATGTTTTTCAGCGAAGATAG ATACGACTTATCTGAGGTTGGTAGAGTAAAATTAAATTCTTATCTTTCATTAGATAAAAATAATAAATCAAGAATTTTAA GTAAGTCTGACATCTTAGCGGTTGCCAAAAAACTTTTTGATATGAAGACTGAAAGTGCTGGCAAAGATGACATTGATCAC TTAGGTAACAGACGAGTTAGATCTGTTGGCGAGTTAATTGAAAACCAGTACAGAATTGGTCTTGTAAGAATGGAAAGAGC AATAAGAGAAAAAATGGGAACGGTTGATATTGAATCAATTATGCCCCAAGATCTTGTTAACTCTAAACCTATTCAAACAG TACTAAAAGAATTCACCGGAACTAGTCAACTTAGCCAATTTATGGATCAAACTAACCCTTTGAGTGAAATTACACATAAG AGACGAATTTCTGCTTTGGGCCCTGGTGGTTTGACCCGAGAGAGAGCCGGTTTTGAAGTTAGAGACGTTCATACAACTCA CTATGGCCGTATTTGTCCAATTGAAACACCCGAAGGTTCAAATATTGGATTGATCAATAGCTTGTCTTCTTATGCAAGAA TTAACCAATATGGCTTTATCGAAACTCCATATAGAAAAATAAACAAAGGTTCAGTTACTGATGAAGTAATCTATTTAAAT GCTGATGAAGAAGAAAATTACACAATCGCTCAGGCAAATAGTCCGATTGATGAGAGTGGAAAATTTTCTGAGGAGTTTGT CAGCTGTAGAAGACGAGGAGATTTTATTTTCTGCAATCCATCCGAAATCGATTTTATGGATGTGAATCCTCAACAGTTAG TTTCAGTAGCCGCATCTCTAATACCATTTTTAGAAAACGACGATGCTAACAGAGCGCTTATGGGATCTAATATGATGAGA CAAGCAGTCCCGTTGGTTAAAAGTGAAGCTCCTCTTGTTGGAACTGGTTTTGAGTCTAAAGTAGCAAGAGATAGTGGTGC TGTAGTTATTGCTAAAAATAGCGGTTATGTTCATCAGGTAGACTCTTCTAGAGTTGTGATAAGATCTGATTCAAAAAATA TAAGCAAAGATAAAAGTGGTGTTGATATTTACAACCTTAAGAAATTTCAACGTTCAAATCAAAGCACAGCTATTAATCAA AAACCTATTGTAAAAATTGGTGACTATGTTCAAAGAGGAGACATCATTGCTGATGGCCCTTCTACAGATCTGGGTGAATT AGCACTTGGTAGAAACCTATTAGTAGGGTTTATGCCATGGAATGGTTATAATTTTGAAGACTCTATCATTATGTCCGAGA GAGTTGTTCATGAAGATCGTTTTACCTCAATTCATATCGAAGAATTTGAGGTTCTTTGTAGAGATACCAAACTCGGCCCT GAAGAAATCACACGCGATATGCCAAATGTGGGTGATGAGAGTATAACAAATTTAGATGAAGCTGGAATCGTGTACATAGG TTCCGAAGTAAAACCTGGCGATATATTAGTTGGTAAAGTTTCTCCCAAGGGAGACTCTCCAATAACCCCAGAAGAAAAAC TACTAAGAGCTATATTCTCTGAAAAAGCAGCAGATGTTAAAGATACTTCACTTAGACTACCTACTGGGTATTCTGGTGTT GTTGTTGATGTTCAAGTTCTCGTAAGAAGAGGTGTTGAAAAAGACGAAAGAACTATAGCTATTGAGAGAGTTGAGATCGA CAGATTAGCAAAAGATAGAGATGATGAAAAAAATATTCTTGAAAATAACTATAAACAAAACCTTATAAGTTTATTCAGAA ACAAAACATCGAATGTTTCTTTGGATGTAATATCTAAAGGCAATAAGATTAATGAGTCTGATATTGAAGGAAAGCCCATT GATTTTCTTGAACAGATAGTTGTTGATGATCAAACATCGATGGAAACTTTTAATTCTCAAAAGAAAATTTTTAGTGATGC AGTTATATTACTAGATAAAAAATTCCAAAATAAAATTGAAAAAATTCAAAGTGGAGATGATCTTCTCCCTGGGGTATTAA AAGTTGTAAAAGTATTTGTTGCGGTTAAGAGAAAACTTCAGGCCGGTGATAAAATGGCTGGAAGACATGGAAACAAAGGT GTTATTTCTAAAATAGTACCCGTTGAGGATATGCCATTTTTAGAGGACGGCACTCCAGTAGATGTGCTTTTAAACCCTTT AGGTGTTCCAAGCCGAATGAACATTGGGCAAATTCTTGAAACTCACTTAGGTTGGGCAGCATACGGAATCGGTAAACAGA TTTCTAAAAGCTTAGATTTAGCCAGAAAAGAGGGCAATATTAATCAATTGAAACAATCTCTTGCCTCATTTTATGAAGCC AACAAGGACTCAAATTTAGAGATCCAAAATATGAATGATGATCAACTAGTTGAGTTAGCTGGAAATTTAGAAAAAGGTGT AACCTTCGCTACTCCAGTTTTTGATGGAACTAACACGGAAGAAATAACTAATCTTCTGGATAAAGCGGGATTTGATAATA GTGGTCAAGTATATCTTCATGATGGAAGATCTGGTGAAAGGTTTGAGAGAAAAGTAACTGTTGGATATAAATATATCCTT AAACTACATCACTTAATTGATGACAAAATACATGCTCGTTCAATTGGACCTTACAGCCTAGTAACTCAGCAGCCTCTTGG AGGTAAAGCTCAATTTGGTGGCCAAAGATTTGGAGAAATGGAAGTATGGGCCCTAGAAGCATACGGAGCATCAAACACTC TTCAAGAAATTCTTACGATCAAATCTGACGATGTAGCAGGTAGAACTAAAGTGTATGAGGCTTTAATTAGAGGTGATTAT AACTTTGAAAGTGGAATACCAGAGTCTTTCCATGTTTTAGTTAAAGAGCTTAAATCACTTGGACTGAACGTCGAATTAAT AGAAACAGATCCCACAGCAAGTAGGGAGGGAGCATAA Protein sequence : MPLSFTEKKRIRYSFGKIGKTIEVPNLVDIQKISFDKFLQLGKSVEERSNTGLQEVFNSVFPIKDYAGKSELHYIDYYLD NPKYDVDECRRKGLTFSASLMVTFRLIIWDLNEETGEKSLRDIKEQVVYLGDLPLMTNNGTFVVNGTERVVVSQLHRSPG VFFDHDEGKTHASGKVLYNARIIPYRGSWLDFEFDHKDNLFFRIDRKKKMISTTILQALPSKASEKYLEECQQNKVDPDI YKVSGMTSEEILTYFYETFTFKKQKDGWVVNLDLDKFKYKNLPFNLVDPTSKEIVAHKDVKLSLKLLKEIKDKKVSKFFF AEEDLYGFYLSNDLVNYDNGLVYAEAGTLLSKEFFERLNELSIDQFSVINANQATGNLGIINSLVADKNNSREEALFDIF KILRPGEPPTLEASNYLFQNMFFSEDRYDLSEVGRVKLNSYLSLDKNNKSRILSKSDILAVAKKLFDMKTESAGKDDIDH LGNRRVRSVGELIENQYRIGLVRMERAIREKMGTVDIESIMPQDLVNSKPIQTVLKEFTGTSQLSQFMDQTNPLSEITHK RRISALGPGGLTRERAGFEVRDVHTTHYGRICPIETPEGSNIGLINSLSSYARINQYGFIETPYRKINKGSVTDEVIYLN ADEEENYTIAQANSPIDESGKFSEEFVSCRRRGDFIFCNPSEIDFMDVNPQQLVSVAASLIPFLENDDANRALMGSNMMR QAVPLVKSEAPLVGTGFESKVARDSGAVVIAKNSGYVHQVDSSRVVIRSDSKNISKDKSGVDIYNLKKFQRSNQSTAINQ KPIVKIGDYVQRGDIIADGPSTDLGELALGRNLLVGFMPWNGYNFEDSIIMSERVVHEDRFTSIHIEEFEVLCRDTKLGP EEITRDMPNVGDESITNLDEAGIVYIGSEVKPGDILVGKVSPKGDSPITPEEKLLRAIFSEKAADVKDTSLRLPTGYSGV VVDVQVLVRRGVEKDERTIAIERVEIDRLAKDRDDEKNILENNYKQNLISLFRNKTSNVSLDVISKGNKINESDIEGKPI DFLEQIVVDDQTSMETFNSQKKIFSDAVILLDKKFQNKIEKIQSGDDLLPGVLKVVKVFVAVKRKLQAGDKMAGRHGNKG VISKIVPVEDMPFLEDGTPVDVLLNPLGVPSRMNIGQILETHLGWAAYGIGKQISKSLDLARKEGNINQLKQSLASFYEA NKDSNLEIQNMNDDQLVELAGNLEKGVTFATPVFDGTNTEEITNLLDKAGFDNSGQVYLHDGRSGERFERKVTVGYKYIL KLHHLIDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNTLQEILTIKSDDVAGRTKVYEALIRGDY NFESGIPESFHVLVKELKSLGLNVELIETDPTASREGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 54 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HIMB59_00010060 | YP_006758370.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 55 |
| HIMB59_00010060 | YP_006758370.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 55 |
| HIMB59_00010060 | YP_006758370.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 55 |
| HIMB59_00010060 | YP_006758370.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 55 |
| HIMB59_00010060 | YP_006758370.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 54 |
| HIMB59_00010060 | YP_006758370.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 54 |
| HIMB59_00010060 | YP_006758370.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 54 |
| HIMB59_00010060 | YP_006758370.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 54 |
| HIMB59_00010060 | YP_006758370.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 54 |
| HIMB59_00010060 | YP_006758370.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 54 |
| HIMB59_00010060 | YP_006758370.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 54 |
| HIMB59_00010060 | YP_006758370.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 54 |
| HIMB59_00010060 | YP_006758370.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 53 |
| HIMB59_00010060 | YP_006758370.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 53 |
| HIMB59_00010060 | YP_006758370.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 52 |
| HIMB59_00010060 | YP_006758370.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 52 |
| HIMB59_00010060 | YP_006758370.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 52 |
