|
Name : rpoB (AMEC673_17665) Accession : YP_006800588.1 Strain : Alteromonas macleodii English Channel 673 Genome accession: NC_018678 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 4157459 - 4161487 bp Length : 4029 bp Strand : - Note : COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit DNA sequence : ATGGTTTACTCTTATAGCGAAAAGAAACGTATCCGTAAGGATTTTGGCAAACGCCCACAGGTATTGGAAATTCCATACCT TCTTTCAATTCAGCTTGATTCTTTCAAAAAGTTTATTGAGATCGATGCAGATGCTCAATACGGTTTGGAAGCAGCATTTC GTTCCGTTTTTCCAATTAAAAGCTACTCAGGTAGTTCAGAGCTTCAGTATGTAAGCTACCGCCTGGGAGAGCCCGTTTTC GACGTTAAAGAATGTCAAATTCGCGGCGTAACTTTCTCTGCTCCGTTAAGAGTAAAACTACGGTTAGTGTTGTTCGATAA AGACGCTGCGCCAGGTACCGTAAAAGATATTAAAGAACAAGAAGTGTACATGGGCGAGATCCCATTGATGACTGAGAACG GTACGTTCGTTATCAATGGTACAGAGCGTGTTATCGTGTCACAGCTACACCGTTCACCTGGTGTATTCTTTGATCACGAC AAAGGTAAAACCCACTCGTCAGGTAAAGTGCTTTATAACGCACGTGTAATTCCTTACCGTGGTTCGTGGTTAGACTTCGA GTTTGACCCGAAAGATAACCTATTCGTACGTATCGACCGTCGTCGTAAGTTGCCTGCAACGATTATCTTACGCGCACTTG AAATGACGTCTGAAGAAATCCTAGATACTTTCTTCGACAAAGTAAGCGTACGTATCGACAAAGACAAACTAATGATGGAA GTGGTTCCAGATCGCCTACGTGGTGAGACGGCTGCTTTTGACATCATTGACGGTGAAGGCAACGTTGTTGTTGAAACGGG TCGTCGTATTTCTGCGCGCCACACGCGTGCACTAGAAAAAGCCGGTCTTACAGAACTTGAAGTTCCAGCCGATTACCTAA TTGGCCGTGTTTACGCAGCTACTTATGTAAACGAAGACACAGGCGAAGTGATTGTAAGCGCGAACGACGAACTAACCCTT GAAAACCTAGCGGCACTTAGCCAAGCGGGTATCAAAGAGTTCGAAACGCTTTACATCAACGAGCTAGATCACGGTTCATA CATTTCAGATACGCTACGTATCGATTCTTCAACTAACCGCCTTGAAGCACTAGTTGAAATCTACCGTATGATGCGTCCTG GTGAGCCACCAACGAAAGATGCAGCTGAAACCTTGTTCGATAACTTGTTCTTCTCTGATGAACGTTACGACCTATCTTCT GTTGGCCGCATGAAGTTCAACCGCCGTCTTGGCCGTGAAGAACTTATTGGTGCTGGTACACTGGATAAAGAAGACATTAT TTCTGTAATGAAGCAGCTAATAATGATTCGTGACGGTAAAGACGAAGTAGATGATATCGATCACCTAGGTAACCGTCGTA TCCGTTCTGTAGGTGAAATGGCAGAGAACCAATTCCGCGTTGGTCTTGTACGTGTTGAGCGTGCAGTTAAAGAGCGTCTA AGCTTAGGCGACCTAGACAACGTGATGCCACAAGATCTTATTAACGCTAAGCCTATCTCGGCTGCGGTTAAAGAGTTCTT CGGTTCATCTCAGCTTTCTCAGTTCATGGACCAAAACAACCCGCTATCAGAAGTAACGCATAAGCGTCGTATTTCTGCAT TAGGCCCGGGTGGTCTTACACGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGTCTATGT CCAATCGAAACGCCGGAAGGCCCGAACATCGGTCTAATTAACTCATTGGCAAGCTTCGCGCGTACCAATGACTTCGGTTT CCTAGAAACGCCGTTCCGTCGCATTGTAGACGGTGTCGTAACAGACGAAATCGATTACTTATCTGCAATTGAAGAAGGTC AATTCGCAATCGCTCAGGCAAACATCGCGTTGACTGAAGCAGGCGAGTTGGTTGACGACCTTATTCCATGTCGTCACCGC GGTGAAACTACCTTGATGCCGAAAGAAGACATCAAGTACATGGACGTTTCACCTCAGCAAATTGTTTCAATTGCTGCAAG CATTATCCCATTCCTAGAGCACGATGATGCGAACCGTGCACTTATGGGTGCGAACATGCAACGTCAGGCAGTACCTACAC TACGCGCTGATAAGCCGCTAGTTGGTACCGGTATGGAAAGAACTATCGCGGTTGACTCAGGTGTTACTGTAGTTGCTAAG CGCGGTGGTGTGGTTGATTACGTAGATGCCAGCCGTATCGTTATTAAAGTAGACGAAGATGAAATGCTTCCAGGTGAAGC AGGTATCGATATCTACAACCTGACTAAGTACACTCGTTCTAACCAAAACACGTGTATCAATCAGAAGCCTACTTGTAGTG TTGGCGACCCGATTGTTGCAGGCGACGTGCTAGCTGATGGTCCTTCAACAGACCTAGGTGACCTTGCACTTGGTCAGAAC ATGCGTATCGCGTTCATGCCGTGGAATGGTTACAACTTTGAGGATTCAATCCTTATTTCTGAGCGTGTAGCGCAGGAAGA CCGTTTTACTACTATCCACATTCAAGAGCTTAGCTGTATCGCTCGTGATACTAAGCTTGGGCCAGAAGAAATTTCTTCTG ATATCCCGAACGTGGGTGAATCTGCACTAAGCAAGCTTGATGAGTCAGGTGTTGTTTACATTGGTGCGGAAGTGAAAGGC GGTGACATCCTTGTAGGTAAAGTAACGCCTAAAGGTGAAACGCAGCTTACGCCAGAAGAGAAACTACTACGTGCAATCTT CGGTGAGAAAGCGTCTGACGTTAAAGATACGTCTCTACGTGTACCTAACTCTGTTCACGGTACGGTAATCGACGTTCAAG TATTTACCCGTGACGGTGTAGAGAAAGACAAGCGTGCGCTAGAAATTGAAGATATGCAGCTACGTCAGGTTAAGAAAGAC CTTACTGACGAGTTCGAAATTCTTGCAGACGGTATCTTCGCACGTGCACAAACTGCACTACTACGTGCTGGTGTTGACCA AGCTAAGCTTGACAGCCTGCCGCGTGAAAAGTGGTTTGAAATCGCACTTAACAGTGAAGATGCACAGCTAGAGCTAGACC AAATCGCTGATCAGCATGCTGAAATCAAACTTGATTTCGATAAGAAGTTTGAAGGTAAGCGTCGCAAGATCACTCAAGGC GATGATCTAGCCCCTGGTGTGCTTAAGATCGTTAAGGTTTACCTTGCGGTTAAACGTCACATCCAACCGGGTGATAAAAT GGCCGGTCGTCACGGTAACAAAGGTGTTATCTCGACTATCCAGCCTGTAGAAGACATGCCATACGATGCTAACGGTACGC CGGTAGATATCGTTCTTAACCCACTAGGTGTACCGTCTCGTATGAACATCGGTCAGATCCTAGAAACGCACTTGGGTATG GCTGCACACGGTCTTGGTGTGAAGATTGATCGCATGATTAAAGAGCAGCGCGAGCTGGCTGAACTACGTGACTTCCTGAA GAAGGTGTACGAGCTTGGTGAGAATCACCAAGAAGTAGACATCGATAGCTTCACAGACCACGAAGTTCGTCGCCTAGCGG AAAACCTTCGTAAGGGTGTTCCAGTAGCAACACCTGTATTCGACGGTGCTCGTGAATCTGAAATCAAAGAAATGCTGAAG CTTGCTGATATTCCAGAAAGCGGTCAGATTGCTTTGTTTGACGGTCGTACCGGTCGCGAATTTGAGCGTCCAGTTACGGT TGGTTACATGTACATGCTGAAACTGAACCACTTAGTAGACGACAAAATGCACGCGCGTTCTACTGGTTCTTACAGCCTTG TTACACAGCAGCCTCTTGGTGGTAAAGCACAGTTCGGTGGTCAGCGCTTCGGTGAGATGGAAGTGTGGGCACTTGAAGCA TACGGTGCAGCATATACCCTTCAAGAAATGCTTACCGTTAAGTCGGATGACGTTAACGGCCGTACCAAGATGTACAAGAA CATCGTCGATGGCGACCACAGAATGGAACCTGGCATGCCAGAGTCATTCAACGTACTACTTAAAGAAATTCGCTCGTTGG GTATCAACATCGAGCTTGAAGAAAAGTAA Protein sequence : MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIEIDADAQYGLEAAFRSVFPIKSYSGSSELQYVSYRLGEPVF DVKECQIRGVTFSAPLRVKLRLVLFDKDAAPGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHD KGKTHSSGKVLYNARVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALEMTSEEILDTFFDKVSVRIDKDKLMME VVPDRLRGETAAFDIIDGEGNVVVETGRRISARHTRALEKAGLTELEVPADYLIGRVYAATYVNEDTGEVIVSANDELTL ENLAALSQAGIKEFETLYINELDHGSYISDTLRIDSSTNRLEALVEIYRMMRPGEPPTKDAAETLFDNLFFSDERYDLSS VGRMKFNRRLGREELIGAGTLDKEDIISVMKQLIMIRDGKDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL SLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLC PIETPEGPNIGLINSLASFARTNDFGFLETPFRRIVDGVVTDEIDYLSAIEEGQFAIAQANIALTEAGELVDDLIPCRHR GETTLMPKEDIKYMDVSPQQIVSIAASIIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERTIAVDSGVTVVAK RGGVVDYVDASRIVIKVDEDEMLPGEAGIDIYNLTKYTRSNQNTCINQKPTCSVGDPIVAGDVLADGPSTDLGDLALGQN MRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCIARDTKLGPEEISSDIPNVGESALSKLDESGVVYIGAEVKG GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVHGTVIDVQVFTRDGVEKDKRALEIEDMQLRQVKKD LTDEFEILADGIFARAQTALLRAGVDQAKLDSLPREKWFEIALNSEDAQLELDQIADQHAEIKLDFDKKFEGKRRKITQG DDLAPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISTIQPVEDMPYDANGTPVDIVLNPLGVPSRMNIGQILETHLGM AAHGLGVKIDRMIKEQRELAELRDFLKKVYELGENHQEVDIDSFTDHEVRRLAENLRKGVPVATPVFDGARESEIKEMLK LADIPESGQIALFDGRTGREFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 69 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 80 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 80 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 80 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 80 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 80 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 79 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 69 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 69 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 69 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 69 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 69 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 69 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 65 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 65 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 64 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 45 |
| rpoB | YP_006800588.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 0.0 | 45 |
