Gene Information

Name : BUPH_06376 (BUPH_06376)
Accession : YP_006835558.1
Strain :
Genome accession: NC_018695
Putative virulence/resistance : Unknown
Product : DNA-directed RNA polymerase subunit beta
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3831066 - 3835172 bp
Length : 4107 bp
Strand : -
Note : identified by sequence similarity; putative

DNA sequence : 
ATGCAATATTCCTTCACCGAGAAGAAGCGTATTCGCAAGAGTTTTGCGAAGCGCCCCATCGTTCACCAAGTACCTTTCCT
GCTGGCTACCCAGCTTGAATCATTCAGCACGTTTCTGCAAGCAGATACGCCGTCTACGCAGCGCAAGCCGGAAGGCCTGC
AGGCTGCGTTTACATCCGTTTTCCCGATCGTTTCGCACAACGGGTTCGCACGCCTCGAGTTCGTCAGCTACATGCTGTCG
CCGCCGGCATTCAACATCAAGGAGTGTCAGCAGCGCGGTTTGACCTACTGCTCGGCGCTGCGCGCCAAAGTGCGTCTGGT
GCTGCTCGATAAAGAATCGCCGAGCAAGCCGGTCGTCAAGGAAGTGAAGGAACAGGAAGTGTACATGGGCGAAATTCCGC
TCATGACGCCGACGGGTTCGTTCGTCATCAACGGCACGGAGCGCGTGATCGTTTCGCAGCTGCACCGTTCGCCTGGCGTG
TTCTTCGAGCACGACAAGGGCAAGACGCACAGCTCGGGCAAGCTCCTGTTCTCCGCACGTATCATTCCTTACCGCGGTTC
GTGGCTCGACTTCGAGTTCGACCCGAAGGACGTGCTGTACTTCCGCGTCGACCGCCGCCGCAAGATGCCGGTCACGATCC
TGCTGAAGGCAATCGGCCTCACGCCGGAACAGATCCTCGCAAACTTCTTCGTGTTCGATAACTTCACGCTGATGCCCGAA
GGCGCGCAGATGGAGTTCGTGCCGGAGCGTCTGCGTGGCGAAGTCGCGCGTTTCGACATTACCGACCGCGACGGCAACGT
GATCGTCCAGAAGGACAAGCGGATCAACGCGAAGCACATCCGCGACCTGGACAACGCCAAGACCAAGTTCATCTCGGTTC
CGGAAGACTATCTGCTCGGCCGCGTGCTGGCGAAGAACGTCGTCGACGGCGACACCGGTGAAGTCATCGCGAATGCGAAC
GACGAAATCACGGAAACCGTCCTCGAAAAGCTGCGCGAAGCGAAGATCAAGGACATCCAGACGCTTTATACGAACGATCT
GGACCAGGGTCCGTACATCTCGTCCACGCTGCGTATCGACGAAACCGCCGACAAGATGGCCGCGCGCATCGCGATCTACC
GCATGATGCGCCCGGGCGAGCCGCCGACCGAAGAAGCGGTCGAGGCACTGTTCAACCGTCTGTTCTACAGCGAAGACGCC
TACGACCTGTCCAAGGTGGGTCGTATGAAGTTCAATCGCCGCGTGGGTCGCGACGAGATCGTCGGCCCGATGACGCTGCA
GGACGACGACATTCTCGCGACGATCAAGATTCTGGTCGAGCTGCGTAACGGCAAGGGCGAAGTCGACGACATCGACCACC
TCGGCAATCGCCGTGTGCGTTGCGTCGGCGAACTGGCGGAGAACCAGTTCCGCGCCGGTCTCGTGCGTGTGGAACGTGCT
GTGAAGGAACGCCTCGGCCAGGCCGAAAGCGAAAACCTGATGCCGCACGACCTGATCAACTCGAAGCCGATTTCGTCGGC
GATTCGCGAGTTCTTCGGTTCGTCGCAGCTGTCGCAGTTCATGGACCAGACCAACCCGCTGTCGGAAATTACCCACAAGC
GCCGTGTTTCGGCACTGGGCCCGGGTGGTTTGACGCGTGAGCGCGCAGGCTTCGAAGTGCGCGACGTGCATCCTACGCAT
TACGGCCGCGTCTGCCCGATTGAAACGCCTGAAGGTCCGAACATCGGTCTGATCAACTCGCTCGCGCTGTACGCGCACCT
GAACGAATACGGCTTCCTCGAAACGCCGTATCGCAAGGTCGTGGACGGCAAGGTGACGGACCAGATCGACTACCTGTCGG
CGATCGAAGAAGGCCGTTACGTGATCGCGCAGGCGAACGCGGCAGTGGCTGAAGACGGCACGCTGACCGACGAACTCGTG
TCGTCGCGTGAAGCGGGCGAAACGCTGATGGTCACGCCGGACCGCATCCAGTACATGGACGTGGCGCCGTCGCAGATCGT
CTCGGTCGCTGCATCGCTGATTCCGTTCCTCGAGCACGACGACGCGAACCGCGCATTGATGGGCTCGAACATGCAGCGTC
AGGCTGTGCCGTGTCTGCGTCCTGAAAAGGCCGTGGTCGGTACGGGTATCGAGCGCACGGTCGCGGTCGACTCGGGCACG
ACGGTTCAGGCCTTCCGCGGCGGCGTGGTCGACTACGTCGACGCGGGCCGTATCGTGATTCGCGTGAACGACGAAGAAGC
GGTGGCTGGCGACGTCGGTGTCGACATCTACAACCTGATCAAGTACACGCGTTCGAACCAGAACACGAACATCAACCAGC
GTCCGATCGTGAAGGTCGGCGACAAGGTTTCGCGCGGCGACGTGCTGGCTGACGGCGCATCCACGGACCTCGGCGAACTG
GCGCTCGGCCAGAACATGCTGGTCGCGTTCATGCCGTGGAACGGCTACAACTTCGAAGACTCGATCCTGATCTCGGAGAA
GGTGGTGGCCGACGACCGTTACACGTCGATCCACATCGAAGAACTGAACGTCGTGGCTCGCGACACGAAGCTCGGACCGG
AAGAAATCACGCGCGACATCTCGAACCTGGCTGAAGTACAACTCGGCCGTCTCGACGAGTCGGGCATCGTCTACATCGGC
GCGGAAGTCGAAGCAGGCGACGTGCTGGTCGGCAAGGTCACGCCGAAGGGCGAAACCCAGCTGACGCCGGAAGAGAAGCT
GCTGCGCGCCATTTTCGGCGAGAAGGCTTCGGACGTGAAGGACACCTCGCTGCGCGTGCCGTCGGGCATGAGCGGCACGG
TGATCGACGTCCAGGTGTTCACGCGCGAAGGCATTCAGCGCGACAAGCGCGCGCAACAGATTATCGACGACGAACTGAAG
CGCTATCGTCTCGACCTGAACGACCAGCTGCGTATCGTGGAAGGCGACGCGTTCCAGCGTCTCGCGCGCATGCTGACGGG
CAAGGTCGCGAACGGCGGTCCGAAGAAGCTCGCGAAGGGCACGAAGATCGAACAGGCTTACCTGGAAGATCTTGATCACT
ACCACTGGTTCGACATCCGCCTCGCGGACGAAGAAGCAGCGGCGCAGCTCGAAGCGATCAAGGATTCGATCGAACAGAAG
CGTCACCAGTTCGACCTGGCGTTCGAAGAAAAGCGCAAGAAGCTCACGCAAGGCGACGAACTGCCGCCGGGCGTGCTGAA
GATGGTCAAGGTGTATCTGGCAGTCAAGCGCCGTCTGCAGCCTGGCGACAAGATGGCGGGTCGTCACGGTAACAAGGGTG
TCGTGTCGAAGATCGTGCCGATCGAAGACATGCCGTACATGGCCGACGGCCGTCCGGCTGACGTCGTTCTGAACCCGCTC
GGCGTGCCGTCGCGGATGAACGTGGGTCAGGTTCTCGAAGTGCATCTGGGCTGGGCCGCGAAGGGTCTCGGCTGGCGTAT
CGGCGAAATGCTGCAGCGTCAGGCGAAGATCGAAGAACTGCGCGAGTTCCTGACCAAGATCTACAACGAGTCGGGCCGCG
CCGAAGAGCTGGACAGCTTCACCGACGAGGAAATCGTCGAACTGGCGAAGAACCTGCGCGAAGGCGTGCCGTTCGCGACG
CCGGTGTTCGACGGTGCGACGGAAGAAGAAATGTCGCGCGCGCTGGATCTCGCGTTCCCGGACGACATCGCGCAGAACCT
CGGCATGACGCCGTCGAAGAATCAGGTGCGTCTGTACGACGGCCGCACGGGCGAAATGTTCGAACGTACGGTGACGGTCG
GCTACATGCACTACCTGAAGCTGCACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACGGGCCCGTACTCGCTCGTG
ACGCAGCAGCCGCTGGGCGGTAAGGCGCAGTTCGGTGGCCAGCGTTTCGGTGAAATGGAAGTGTGGGCGCTCGAAGCGTA
CGGCGCATCGTACGTGCTGCAAGAAATGCTGACGGTGAAGTCGGACGACGTGACGGGCCGGACCAAGGTGTACGAGAACC
TGGTCAAGGGCGATCACGTGATCGATGCTGGCATGCCGGAGTCCTTCAACGTGTTGGTGAAGGAAATCCGCTCGCTCGGT
ATCGATATCGACCTCGACCGCAACTAA

Protein sequence : 
MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTPSTQRKPEGLQAAFTSVFPIVSHNGFARLEFVSYMLS
PPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVKEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGV
FFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMPE
GAQMEFVPERLRGEVARFDITDRDGNVIVQKDKRINAKHIRDLDNAKTKFISVPEDYLLGRVLAKNVVDGDTGEVIANAN
DEITETVLEKLREAKIKDIQTLYTNDLDQGPYISSTLRIDETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDA
YDLSKVGRMKFNRRVGRDEIVGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTH
YGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKVVDGKVTDQIDYLSAIEEGRYVIAQANAAVAEDGTLTDELV
SSREAGETLMVTPDRIQYMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSGT
TVQAFRGGVVDYVDAGRIVIRVNDEEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIVKVGDKVSRGDVLADGASTDLGEL
ALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIG
AEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFQRLARMLTGKVANGGPKKLAKGTKIEQAYLEDLDHYHWFDIRLADEEAAAQLEAIKDSIEQK
RHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPL
GVPSRMNVGQVLEVHLGWAAKGLGWRIGEMLQRQAKIEELREFLTKIYNESGRAEELDSFTDEEIVELAKNLREGVPFAT
PVFDGATEEEMSRALDLAFPDDIAQNLGMTPSKNQVRLYDGRTGEMFERTVTVGYMHYLKLHHLVDDKMHARSTGPYSLV
TQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLG
IDIDLDRN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00346 YP_008207811.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR25 Protein 0.0 66
BJAB0868_00350 YP_008211676.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR26 Protein 0.0 66

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta CP002695.1.gene18.p0 Protein 0.0 82
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_008702.1.4609796. Protein 0.0 77
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_011035.1.6448762. Protein 0.0 74
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_002516.2.881699.p Protein 0.0 67
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta CP000034.1.gene3741. Protein 0.0 66
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta CP001918.1.gene250.p Protein 0.0 66
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_002695.1.914942.p Protein 0.0 66
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_009085.4918494.p0 Protein 0.0 66
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_010400.5987325.p0 Protein 0.0 66
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_010611.6233925.p0 Protein 0.0 66
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_011595.7060572.p0 Protein 0.0 66
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_010410.6003841.p0 Protein 0.0 66
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_011586.7046027.p0 Protein 0.0 66
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta CP000675.2.gene392.p Protein 0.0 66
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta CP001138.1.gene4362. Protein 0.0 65
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta CP004022.1.gene2794. Protein 0.0 65
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta CP000647.1.gene4402. Protein 0.0 65
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta AM180355.1.gene120.p Protein 0.0 46
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_002758.1120515.p0 Protein 0.0 45
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_010079.5776819.p0 Protein 0.0 45
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_013450.8613267.p0 Protein 0.0 45
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_007622.3792928.p0 Protein 0.0 45
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_002745.1123305.p0 Protein 0.0 45
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_007795.3920377.p0 Protein 0.0 45
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_009632.5315067.p0 Protein 0.0 45
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_009487.5169226.p0 Protein 0.0 45
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_009782.5559150.p0 Protein 0.0 45
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_002953.2862188.p0 Protein 0.0 45
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_002952.2860169.p0 Protein 0.0 45
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_007793.3914836.p0 Protein 0.0 45
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_003923.1002608.p0 Protein 0.0 45
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_002951.3236234.p0 Protein 0.0 45
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_009641.5330265.p0 Protein 0.0 45
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta AE016830.1.gene3155. Protein 0.0 45
BUPH_06376 YP_006835558.1 DNA-directed RNA polymerase subunit beta NC_012469.1.7686402. Protein 4e-176 43