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Name : rpoB (BN117_0014) Accession : YP_006894110.1 Strain : Bordetella parapertussis Bpp5 Genome accession: NC_018828 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 11614 - 15750 bp Length : 4137 bp Strand : + Note : - DNA sequence : ATGCAACCTCGAGTCGGAGTGCTCATGCCTTACTCGTACACCGAAAAAAAGCGCATCCGCAAAAGCTTTGCCAAACGTGA GGACGTTCAAAACGTTCCCTTCCTGTTGGCGACACAGCTTCAATCCTACCTAACTTTCCTGCAAGCCGACACCGCGACCT CGGATCGCGTCAATGAAGGTCTGCAGGCGGCGTTCTCGTCGATTTTTCCGATTGTCAGCCATAACGGAATGGCGCGCTTG GAGTTCGTCAGCTATGCGCTGGGCGAGCCGGTGTTTGATGTCAAGGAATGTCAGCAGCGCGGCCTGACCTATGCGTCGCC GCTGCGCGCCAAGGTGCGCCTGGTGCTGCTGGACCGCGAAGTCAGCAAGCCGACCATCAAGGAAGTCAAGGAGCAGGAAG TCTACATGGGCGAAATTCCGCTCATGACCGGCACCGGCTCGTTCGTCATCAACGGCACCGAGCGCGTCATCGTCTCGCAG CTGCATCGTTCGCCGGGCGTGTTCTTCGAGCACGACCGCGGCAAGACGCACAGCTCGGGCAAGCTGCTGTTCTCGGCCCG CGTGATTCCCTACCGCGGCTCGTGGCTGGACTTCGAATTCGATCCCAAGGACGTGCTATTCTTCCGCGTGGACCGTCGCC GCAAGATGCCGGTGACGATCCTGCTGAAGGCCATCGGCATGACGCTCGAATCGATCCTCGCGCACTTCTTCGATTTCGAC AACTTCGAACTCAAGAGCGAAGGCGGCATGATGGAATTCGTCGCCGAACGCTGGAAGGGCGAGATGGCGCGCTTTGACAT CGCCGACCGCGACGGCAAGGTGATCGTCGAGAAGGACAAGCGTATCAACGCCAAGCACCTGCGCGACCTGGCTGCCGGCG GCATCCAGCGCGTGTCGGTGCCCGAGGATTTCCTGTACGGCCGCGTGCTGGCCAAGAACATCGTCGATCCCGACACCGGC GAAGTCGTGGCGCATGCCAACGACGAGATCACCGAAAGCGTGCTCAACGCGATGCGCGCCGCCAACGTGCGCGACATCCA GACGCTGTACACCAACGACCTGGATCGCGGTCCCTACATTTCGCAGACGCTGCGCGCCGACGAAACCGCCGACCAGATGG CCGCGCGCGTGGCGATCTACCGCATGATGCGTCCTGGCGAACCGCCCACCGAAGAAGCGGTGGAAGCGCTGTTCCAGCGT CTGTTCTACAGCGAAGAGACGTACGACCTGTCGCGCGTGGGCCGCATGAAGGTCAACAGCCGTCTGGGTCGCGGCGACGA CAGCACCGGTCCGATGACGCTGACCAACGAGGACATCCTCGAAACCATCAAGGTGCTGGTCGAGCTGCGCAACGGCCGTG GCCAGATCGATGACATCGATCACCTGGGCAACCGCCGCGTGCGTTGTGTCGGCGAACTGGCCGAGAACCAGTTCCGCGCT GGCTTGGTGCGTGTCGAGCGCGCCGTCAAGGAGCGTCTGGGCCAGGCCGAGACCGAAAACCTGATGCCGCACGACCTGAT CAACTTCAAGCCGATCTCGGCCGCCATCAAGGAGTTCTTCGGTTCGAGCCAGCTGTCGCAGTTCATGGACCAGACCAACC CGCTGTCGGAAATCACGCACAAGCGTCGCGTTTCCGCACTGGGCCCGGGCGGCCTGACGCGCGAACGCGCCGGCTTTGAA GTGCGCGACGTGCACCCGACCCACTACGGCCGCGTCTGCCCGATCGAAACGCCGGAAGGCCCGAACATCGGCCTGATCAA CTCGATGGCGCTGTACGCGCGCCTGAACGAGTACGGCTTCCTGGAAACCCCGTATCGCAAGATCATCGACGGCAAGGTCA GCGACCAGATCGACTACCTGTCGGCCATCGAGGAAAGCCACTACGTGATCGCGCAGGCCAACGCCGCGCTCGATGACGAA GGCCGTTTCGTCGACGACCTGGTGGCTTGCCGCGAAGCGGGCGAAACCATGCTGACCGCGCCGGGCAACGTGCACTACAT GGACGTGGCGCCGTCGCAGATCGTGTCGGTCGCGGCGTCGCTGATCCCGTTCCTCGAGCACGACGACGCCAACCGTGCAC TGATGGGCGCCAACATGCAGCGCCAGGCCGTGCCTTGCCTGCGTCCGGAAAAGCCGCTGGTCGGCACCGGCGTCGAGCGC ACCGTTGCGGTCGACTCGGGCACGACCGTGCAGGCGCTGCGTGGCGGCGTGGTTGACCACGTCGACGCCGACCGCGTCGT GATCCGCGTCAACGACGAAGAGAACGTCGCTGGCGAAGTGGGCGTGGACATCTACAACCTGATCAAGTACACGCGTTCCA ACCAGAACACGAACATCAACCAGCGTCCCATCGTGGCCCGCGGCGACAAGGTCGCCAAGGGTGACGTGCTGGCCGACGGC GCGTCCACCGACCTCGGTGAACTCGCGCTGGGCCAGAACATGCTGATCGCGTTCATGCCCTGGAACGGCTACAACTTCGA AGACTCGATCCTGATCTCCGAACGCGTCGTGGCCGACGATCGCTACACCTCGATCCACATCGAAGAGCTGACCGTGGTCG CTCGCGATACGAAGCTGGGACCCGAGGAAATCACGCGCGACATCAGCAACCTGGCTGAAACGCAGCTCAACCGCCTGGAT GACTCCGGCATCGTCTACATTGGCGCGGAAGTCAGCGCCGACGACGTGCTGGTGGGCAAGGTAACGCCGAAGGGCGAAAC CCAGCTCACGCCGGAAGAAAAGCTGCTGCGCGCCATCTTCGGCGAAAAGGCGTCCGACGTTAAGGACACCTCGCTGCGCG TGCCCTCGGGCATGACCGGCACGGTGATCGACGTCCAGGTGTTCACGCGCGAAGGCATCGTGCGCGACAAGCGCGCCCAG TCCATCATCGACGATGAATTGCGTCGTTATCGCCAGGACCTCAACGACCAGCTGCGCATCGTCGAAAACGACCAGTTCGA CCGTATCGAGAAGATGCTGGTCGGCAAGGCCGTCAATGGCGGCCCGCGCAAGCTGGCCAAGGGCGCCACCTTGACCAAGG CCTACCTGGCCGACCTGGATCGCTGGCAGTGGTTCGACATCCGCCTGGCCGACGAACAGCACGCTGTCGTGCTGGAGCAG GCCAAGGAATCGCTCGAGCAGAAGCGCCACCAGTTCGACCTGGCCTTCGAAGAGAAGCGCAAGAAGCTGACGCAGGGCGA CGAACTGCCGCCGGGCGTGCTGAAGATGATCAAGGTCTACCTGGCCGTCAAGCGCCGCCTGCAGCCGGGCGACAAGATGG CCGGCCGTCACGGCAACAAGGGCGTGGTTTCGCGCATTACGCCGGTCGAGGACATGCCCCACATGGCCGACGGCACTCCC GCCGACATCGTTCTGAACCCGCTGGGCGTGCCCTCGCGGATGAACGTCGGCCAGGTGCTGGAAGTCCATCTGGGCTGGGC CGCCAAGGGCGTGGGCTACCGCATCGCCGACATGCTGCGCGACGAGCGCACGGCGCAGGCCAAGAGCGTACGCGGCTACC TGGAGAAGGTGTACAACACCACGGGCAGCAGCGCGCATATCGACAGCCTGACCGACGAGGAAGTGCTGGAACTGGCCAAC AACCTGAAGAAGGGTGTGCCGTTTGCCACGCCGGTGTTCGACGGTGCGACCGAAGAAGAAATCGGCAAGATGCTGGAACT GGCCTATCCCGACGACGTCGCCGCGCGCATGCGTCTGACGGCGTCGCGTTCGCAGGCATGGCTGTATGACGGCCGTACCG GCGAGCAGTTCGAGCGTCCGGTCACGATCGGCTACATGCACTACCTGAAACTGCACCACTTGGTGGACGACAAGATGCAC GCGCGTTCCACCGGCCCGTACTCGCTGGTTACCCAGCAGCCGTTGGGCGGCAAGGCGCAGTTCGGCGGCCAGCGTTTCGG GGAAATGGAAGTGTGGGCGCTGGAAGCCTACGGTGCCTCCTACACCCTGCAGGAAATGCTGACGGTGAAGTCCGACGACA TCACCGGCCGCACGAAGGTTTACGAAAACATCGTCAAGGGCGACCACGTCATCGATGCCGGCATGCCGGAATCGTTCAAC GTGCTGGTCAAGGAAATTCGCTCGCTGGCCCTGGACATGGATTTGGAGCGTAACTGA Protein sequence : MQPRVGVLMPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTATSDRVNEGLQAAFSSIFPIVSHNGMARL EFVSYALGEPVFDVKECQQRGLTYASPLRAKVRLVLLDREVSKPTIKEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQ LHRSPGVFFEHDRGKTHSSGKLLFSARVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTLESILAHFFDFD NFELKSEGGMMEFVAERWKGEMARFDIADRDGKVIVEKDKRINAKHLRDLAAGGIQRVSVPEDFLYGRVLAKNIVDPDTG EVVAHANDEITESVLNAMRAANVRDIQTLYTNDLDRGPYISQTLRADETADQMAARVAIYRMMRPGEPPTEEAVEALFQR LFYSEETYDLSRVGRMKVNSRLGRGDDSTGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRA GLVRVERAVKERLGQAETENLMPHDLINFKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFE VRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETPYRKIIDGKVSDQIDYLSAIEESHYVIAQANAALDDE GRFVDDLVACREAGETMLTAPGNVHYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGVER TVAVDSGTTVQALRGGVVDHVDADRVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPIVARGDKVAKGDVLADG ASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTSIHIEELTVVARDTKLGPEEITRDISNLAETQLNRLD DSGIVYIGAEVSADDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQ SIIDDELRRYRQDLNDQLRIVENDQFDRIEKMLVGKAVNGGPRKLAKGATLTKAYLADLDRWQWFDIRLADEQHAVVLEQ AKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQPGDKMAGRHGNKGVVSRITPVEDMPHMADGTP ADIVLNPLGVPSRMNVGQVLEVHLGWAAKGVGYRIADMLRDERTAQAKSVRGYLEKVYNTTGSSAHIDSLTDEEVLELAN NLKKGVPFATPVFDGATEEEIGKMLELAYPDDVAARMRLTASRSQAWLYDGRTGEQFERPVTIGYMHYLKLHHLVDDKMH ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDITGRTKVYENIVKGDHVIDAGMPESFN VLVKEIRSLALDMDLERN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 65 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 65 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 99 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 77 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 74 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 68 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 67 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 65 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 65 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 65 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 65 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 65 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 65 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 65 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 65 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 65 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 65 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 65 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 65 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 47 |
| rpoB | YP_006894110.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 46 |
