Gene Information

Name : PputUW4_02117 (PputUW4_02117)
Accession : YP_007029124.1
Strain : Pseudomonas sp. UW4
Genome accession: NC_019670
Putative virulence/resistance : Virulence
Product : ABC transporter family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2468192 - 2468878 bp
Length : 687 bp
Strand : +
Note : [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGATCCGCCTGCGCGGCGGCAGCCGCAGCTTCCAGTTGGGCGAGCAGAAGGTGATGGGGCTGGACGGCCTGGACCTGGA
CATCGCCGCCGGTGACTACATGGCGGTGATGGGCCCGTCGGGCTCGGGCAAGTCGACCCTGCTGAACATCCTCGGTTTGC
TCGATGCGCCGAGCGCCGGCGAATACTGGCTGCAGGGCGAGGCCACGGCGACGCTGAGCGAGGCGCGGCGCGCCCAATTG
CGCAGCCAACTGATAGGTTTCGTGTTCCAGTCCTACCACCTGATCGCACGGCTGACGGTGCTGGAGAACATCGAGCTGCC
GATGGTCCTCGCCGGCATCGGCGCGGCGCAACGGCACAAGCGCAGCAGCCAATTGGTGGCGCGCCTGGGGCTGGGCGATC
GTATTGCCCACCGCCCGGGCGAGCTGTCCGGTGGACAGCGCCAGCGCGTCGCCATCGCCCGGGCGATGGTCATGCAACCG
GCGCTGTTGTTGGCCGACGAGCCCACCGGGAATCTCGATAGCCAGGCCGGCGCCGAAGTCTTCAGCCTGCTGGAGGAGCT
CAACGACGAGGGGCTGACCCTGATAGTGGTGACCCACGACGCCAGCCTGGGCGCCCGCGCGCACCGCCAGTTACACATGC
GTGACGGGCGGATCCACAGTGCTGCGTCGCAGCAGGCGCTGGCCTGA

Protein sequence : 
MIRLRGGSRSFQLGEQKVMGLDGLDLDIAAGDYMAVMGPSGSGKSTLLNILGLLDAPSAGEYWLQGEATATLSEARRAQL
RSQLIGFVFQSYHLIARLTVLENIELPMVLAGIGAAQRHKRSSQLVARLGLGDRIAHRPGELSGGQRQRVAIARAMVMQP
ALLLADEPTGNLDSQAGAEVFSLLEELNDEGLTLIVVTHDASLGARAHRQLHMRDGRIHSAASQQALA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputUW4_02117 YP_007029124.1 ABC transporter family protein NC_008702.1.4606598. Protein 5e-51 61
PputUW4_02117 YP_007029124.1 ABC transporter family protein NC_012469.1.7686878. Protein 1e-50 47
PputUW4_02117 YP_007029124.1 ABC transporter family protein CP001581.1.gene598.p Protein 6e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputUW4_02117 YP_007029124.1 ABC transporter family protein VFG2059 Protein 4e-18 44