Gene Information

Name : PputUW4_02896 (PputUW4_02896)
Accession : YP_007029896.1
Strain : Pseudomonas sp. UW4
Genome accession: NC_019670
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3403065 - 3403619 bp
Length : 555 bp
Strand : +
Note : [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

DNA sequence :

GTGCGGATCGCCCATGGACATGTGCTCACGATGACGGTTGCCGACTCCTCCTGCGTCCAGAACCTCTACGCCAGCCACCA
CCACTGGTTGCACGAGTTGCTGCGCCGACGCTTGAACAATGCGTTCGATGCCGCCGACCTGGCCCATGACACCTTCATTC
GGGTGCTCAAGCGTCCGCAGGTGTTTGACGGGGAAACCCACGAACGCTCTTATCTGGCGACCATCGCCCGAGGCCTGTGC
ATTGACCACTGGCGTCGTCGCCAGCTGGAACAGGCCTGGCTCGAGACCCTGGCCGCGCAGCCCCAGGCCGTCCAGCCTTC
GCCGGAGCAGCGGGCGATCATCGTCGAAACCCTGTACGAAGTGGATGCCATGCTGCAGCGCTTGCCCCAGCGGGTGCGTG
ATGCGTTCGTTCTGGCGCAGGTGCATGGGCTGCCCTACCGAAACATTGCCGAAGAAATCGGCGTGAGCGAGCGCATGGTG
AAAAAGTACCTGGCCCAGGCGCTGATGCATTGCGCAATGCTCGAAGCCGAACTCGACGGCCTGCTGATTCAATGA

Protein sequence :

MRIAHGHVLTMTVADSSCVQNLYASHHHWLHELLRRRLNNAFDAADLAHDTFIRVLKRPQVFDGETHERSYLATIARGLC
IDHWRRRQLEQAWLETLAAQPQAVQPSPEQRAIIVETLYEVDAMLQRLPQRVRDAFVLAQVHGLPYRNIAEEIGVSERMV
KKYLAQALMHCAMLEAELDGLLIQ

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	3e-22	45

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PputUW4_02896	YP_007029896.1	ECF subfamily RNA polymerase sigma factor	VFG1049	Protein	1e-22	45