Gene Information

Name : Chro_1250 (Chro_1250)
Accession : YP_007090645.1
Strain : Chroococcidiopsis thermalis PCC 7203
Genome accession: NC_019695
Putative virulence/resistance : Virulence
Product : microcompartments protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1392729 - 1393064 bp
Length : 336 bp
Strand : -
Note : PFAM: BMC domain; COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR000249:IPR020808; KEGG: ava:Ava_4710 microcompartments protein; PFAM: microcompartments protein; SPTR: Microcompartments protein

DNA sequence : 
GTGCCACAGGCAGTTGGATCGATTGAAACGAAGGGTTTTCCTGCTGTGTTAGCCGCAGCAGATGCAATGGTTAAAGCCGG
AAGAGTCACTTTAGTTGGTTATATTCGAGTTGGTAGCGCTCGTTTTAATGTCAACGTGCGCGGTGATGTCCAAGAAGTCA
AAACCGCCGTTGCCGCAGGAATTGAGGCAGTAGAAAATGTATACGGAGGTACGCTTGAATCCTGGGTGATCATTCCGCGC
CCACACGAAAACGTAGAAGTCGTACTACCCATCGGCTTTACAGATGAAGTCCAGCGCTTCCGCGACTCGGTGGAACGACC
GATAATTCAAAGATAG

Protein sequence : 
MPQAVGSIETKGFPAVLAAADAMVKAGRVTLVGYIRVGSARFNVNVRGDVQEVKTAVAAGIEAVENVYGGTLESWVIIPR
PHENVEVVLPIGFTDEVQRFRDSVERPIIQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 1e-07 48
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 1e-09 44
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 6e-09 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Chro_1250 YP_007090645.1 microcompartments protein VFG1596 Protein 5e-08 48
Chro_1250 YP_007090645.1 microcompartments protein VFG1598 Protein 5e-10 44
Chro_1250 YP_007090645.1 microcompartments protein VFG1597 Protein 3e-09 43