Gene Information

Name : Mic7113_4139 (Mic7113_4139)
Accession : YP_007123247.1
Strain : Microcoleus sp. PCC 7113
Genome accession: NC_019738
Putative virulence/resistance : Virulence
Product : type I secretion system ABC transporter HlyB family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4835705 - 4838686 bp
Length : 2982 bp
Strand : -
Note : PFAM: ABC transporter transmembrane region; ABC transporter; Peptidase C39 family; Cyclic nucleotide-binding domain

DNA sequence :
ATGACCTATACGACCTCGTTACAAGAATTTCTAGCTGGCATCTATCCGTTTGATCAGCTCTCACCCTCAGCACGAGCCAA
ACTGTCAAGCCAGGGTCAGTTGCTGCGCTATCGCATGGGTCAGCCCATTGTGATCCGGGAGAAAATGCCTCCTCACATTT
CCATCCTGTTTCAGGGGCAAGCCCGTCTGTTGGGATTCGACCCTCGCGGTAGTGCGCCCATCACGTTGAAATTACTGCAA
CCGGGAGAAATTATTGGCTGGGTGAGTGTGATCAGGGGAATTCCCTGTGAAACAGCAATTGCTTCCATAGAATCCGTTTG
TTTTACCCTCAACATCCCTGACTTTTTGCGCTGGTTGGACTCTGAACCCGTTCTGGCGTCTGCCTTTCGCTCTCGTTGCG
CTCTGGTAGAAATTTTCGAGCTTTTAGGAACAGAACTGGCACGGCGTGCCGAGACAGAAGCAAATCTCAAAGAACTGGCT
CTTCAATCGTTGCCCAATGCCCTAATCATGAATGTGGCTCAGGGTAAGCAGATGTCCAGCCAACTCGACACCAGTCGGGT
GTGGATGGTGAGTGGCGGGGCATCAGCGAATGTACCCGTTGGCTCATGCCTCAATTCGGAATCCATAACAACCCTGATCG
TCAACGGTCCCGGTTCAACTCGCCTCGTCGGAATTCCATCGGACGTACTCTCCCCCGCCACGTCAACCCCACCCGGATTA
GCTATCCCAAGCGAGAGCAATAGGCACACGACAATAGACGACGACATTCCTTATGCGGATGCTCAACTCGTTACGACCTC
AGGAAGCTACCTGTCGGAAGAAAAGGCAGGCAAACGAAACTATCCTTTTGTTCGCGGTAGAGGCTCCATTGAGGCAACCT
TAGCGTGCTTCCAGATGCTCTCTCAATATTTTGGAATGCCCTTTCGTCGGGATATTATCCGCCGGGTGATTACCACCCAA
GACGCACGTTCGGGTAACCTTTCTCTAATGCACTGTGGTGCTATTGCAGAATTAATGGGATTGAGCGCTCAACTGGTCAA
TGTCCCTTCGATAGCCGTGTCGCGTCTGCCAACCCCAGTCCTGCTCAGTTGGCAAGATAGCTTTGCCATCCTCTACGAGA
GTAGCGAACGGGAACTCGTACTGGCAGTGCCCGAAAGTGGAATTAAGCGGATTAAACCCTCTCGTTTCATCGAAGACTGG
GGTGACGAGGGACAAGCGCTCCTCCTCAAGACGACCAAATCAACGCCTAAAGAGCGGTTTGGGCTGAACTGGTTTATCCC
GTCTATCATTCGCCATCGCCGAGTTTTGACGGAAGTTCTGATTGCTTCTTTCTTTGTGCAACTGTTTGGTCTGGCGAATC
CCTTGATGATCCAATTGATCATCGACAAAGTGATTGTGCAAAACAGTATTAACACCCTACACGTCTTGGGTGTTTTGCTG
GTCGCCGTGGCAATTTTTGAAGGACTATTAACCAGTCTGCGTACCTACTTATTTGTAGATACGACAAACCGAATTGACAT
GGCGCTGGGTTCGGAAATTATTGACCACTTGTTGCGCCTACCTTTACGCTATTTTGAACGACGACCGGTGGGGGAATTAG
CCACCCGGATTGGTGAGCTAGAAAATATTCGTCAGTTTCTCACAGGCACAGCGCTGACGGTGGTGCTAGATGCGGTTTTC
TCCGTCGTCTACATCATTGTTATGTTCATCTACAGTTGGCTGTTGACGTTGGTGACGTTGGCGGTGATTCCTTTATTTAT
TTTGCTCACTGTTGTTGTTTCTCCCATCGTGCGACAACAGCTACGCACCAAGGCGGAACGTCAGGCGGAAACTCAATCCT
ATTTAGTGGAAGTTTTATCGGGAATTTCCACCGTGAAAGCCCAAAATATTGAGTTGCGTGCTCGTTGGAAATGGCAAGAA
CGCTATGGTCGTTATGTGAGTGATGGATTTAAAAATGTTCTGACTTCAACGGCTGCCAGTTCAACCAGTAACTTCTTGAA
TAAACTCTCGGCTTTGCTGGTGCTTTGGGTGGGAGCTTATTTAGTGTTGGATGGGCAATTAAGTTTAGGGCAGTTGATTG
CCTTCCGCATTATTTCAGGGTATGTGACTGGTCCCTTATTGCGGTTAGCGCAAATTTGGCAGAACTTCCAGCAAACCGCA
CTCTCTTTGGAACGCCTCAGTGATATCGTTGATTCTCCCCAAGAAGCGGACGAAACCGATCGCTACAATATTGCCCTCCC
GCCAGTACAGGGAATGGTGAAGTATGAGGATGTCTCGTTTCGCTTTGGCACAACTGGCCCCTTGCAGTTGAACAATATCA
ATATAGAAATCCCTGCCGGGACATTTGTCGGGATTGTCGGTCAAAGTGGTTCGGGTAAAAGTACTTTAACCAAACTATTG
CCTCGACTGTACGATCCCCTCTCCGGACGGATTATTGTGGATGGTTACGATATCAATAAGGTAGAACTGTATTCCCTGCG
GCGTCAGATTGGCATTGTTCCTCAGGAAACCCTGCTGTTTGATGGCACTGTACAAGAAAATATTGCCTTAACCAATCCCG
ATGCGAGTTCTGAAGACATTATCGAGGCGGCAAGGGTGGCAGTCGCCCACGACTTTATTATGGAGTTACCGAGTGGCTAC
AATACACGAGTTGGGGAGCGGGGTTCGGCCTTATCGGGGGGACAACGGCAGCGAATTGCGATCGCTCGAACGATTTTACA
AAGCCCCCAACTGCTGATTCTAGATGAAGCCACCAGTGCTTTGGATTACAGCACGGAACGGCAGGTGTGTTTGAATTTAG
CCCAAGTCTATAAAGGACGCACAGTCTTTTTCATCACCCATCGCCTAACGACGATTCGCAACGCCGACCTAATTTTGATG
ATGGATCAAGGGGCTGTCGTGGAACAAGGCACCCATGAGCAATTGATGGAGCAAAAAGGCCGCTACTATTGCCTCTACCT
CCAACAAGAAGCGCAACTATAA

Protein sequence :
MTYTTSLQEFLAGIYPFDQLSPSARAKLSSQGQLLRYRMGQPIVIREKMPPHISILFQGQARLLGFDPRGSAPITLKLLQ
PGEIIGWVSVIRGIPCETAIASIESVCFTLNIPDFLRWLDSEPVLASAFRSRCALVEIFELLGTELARRAETEANLKELA
LQSLPNALIMNVAQGKQMSSQLDTSRVWMVSGGASANVPVGSCLNSESITTLIVNGPGSTRLVGIPSDVLSPATSTPPGL
AIPSESNRHTTIDDDIPYADAQLVTTSGSYLSEEKAGKRNYPFVRGRGSIEATLACFQMLSQYFGMPFRRDIIRRVITTQ
DARSGNLSLMHCGAIAELMGLSAQLVNVPSIAVSRLPTPVLLSWQDSFAILYESSERELVLAVPESGIKRIKPSRFIEDW
GDEGQALLLKTTKSTPKERFGLNWFIPSIIRHRRVLTEVLIASFFVQLFGLANPLMIQLIIDKVIVQNSINTLHVLGVLL
VAVAIFEGLLTSLRTYLFVDTTNRIDMALGSEIIDHLLRLPLRYFERRPVGELATRIGELENIRQFLTGTALTVVLDAVF
SVVYIIVMFIYSWLLTLVTLAVIPLFILLTVVVSPIVRQQLRTKAERQAETQSYLVEVLSGISTVKAQNIELRARWKWQE
RYGRYVSDGFKNVLTSTAASSTSNFLNKLSALLVLWVGAYLVLDGQLSLGQLIAFRIISGYVTGPLLRLAQIWQNFQQTA
LSLERLSDIVDSPQEADETDRYNIALPPVQGMVKYEDVSFRFGTTGPLQLNNINIEIPAGTFVGIVGQSGSGKSTLTKLL
PRLYDPLSGRIIVDGYDINKVELYSLRRQIGIVPQETLLFDGTVQENIALTNPDASSEDIIEAARVAVAHDFIMELPSGY
NTRVGERGSALSGGQRQRIAIARTILQSPQLLILDEATSALDYSTERQVCLNLAQVYKGRTVFFITHRLTTIRNADLILM
MDQGAVVEQGTHEQLMEQKGRYYCLYLQQEAQL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlyB NP_755448.1 hemolysin B Virulence PAI I CFT073 Protein 7e-128 41
hlyB CAD33760.1 hemolysin B Virulence PAI I 536 Protein 6e-128 41
hlyB CAD42038.1 HlyB protein Virulence PAI II 536 Protein 6e-128 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mic7113_4139 YP_007123247.1 type I secretion system ABC transporter HlyB family VFG1269 Protein 7e-138 42
Mic7113_4139 YP_007123247.1 type I secretion system ABC transporter HlyB family VFG0907 Protein 3e-128 41
Mic7113_4139 YP_007123247.1 type I secretion system ABC transporter HlyB family VFG1557 Protein 4e-128 41
Mic7113_4139 YP_007123247.1 type I secretion system ABC transporter HlyB family VFG1501 Protein 4e-128 41