|
Name : rpoB (CKBE_00155) Accession : YP_007183421.1 Strain : Kinetoplastibacterium blastocrithidii Genome accession: NC_019814 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 154538 - 158503 bp Length : 3966 bp Strand : - Note : identified by sequence similarity; putative DNA sequence : ATGCGTTCTGTTGATGGTTTGCAAGCGGCTTTTTTGTCAATTTTTCCTATAATTAGTCATAATGGATCTGCTTGCCTAGA GTTTGTTAGCTATTCTCTAGGTGATCCTATATTCGATGTTAAAGAGTGTCAACAGCGTGGTTTGTCTTATGCTTCGCCAT TAAGAGCAAAATTACGCCTGGTTTTGATAGATAAAGATTCGAACAAGTCAAATATAAAGGAAGTTAAGGAACAGGAAGTT TATATGGGAGAGATTCCTCTTATGACATCTTCTGGTTCCTTTATTATTAATGGTACAGAGCGTGTTGTTGTTTCTCAGTT ACATAGATCACCAGGAGTATTTTTTGAGCATGACAAAGGTAAAACTCATAGCTCAGGAAAATTGTTATTTTCAGCTAGAA TAATACCTTATCGTGGATCGTGGTTAGATTTTGAGTTTGACCCTAAGGATATATTGTTCTTTAGAATCGACCGAAGAAGA AAGATGCCTGTAACAATTTTGTTAAAGGCTATTGGTTTCTTAGATGAATTTATACTCTCTTATTTTTTTGATTTTGATTC ATTTGAATTGAAGAGTAATTGTTCTGTTTTAGAATTTATTCCTGATAGGTGGAAGGGTGAAGTAGCTAGCTTTGACATTG TTGATAAAGAAGGGAATATTATAGTAGAAAAGGATAAGAGAATAAGTTCTAGAAGCATAAGACTAATTTCTCAATCTAAT ATAAATGCTATTACTGTATCAGATGATTTTTTGCTGAGTAGAGTTGTTGCTGAAAATATTATTGATCCCGAGACTGGAGA AGTTTTAGTTCATGCTAATGAAGAAATTTCAGAACAAACCCTGGAGACTTTGAGGGATTCTGGTGTAAAAAATATTAGAA CTTTATATACGAATGATTTAGACAGAGGGGCTTATATTTCTCAGACTCTTAGAATAGATGAAACTGTCGATCAAATGTCT GCCAAGATAGCCATATATCGAATGATGAGGCCTGGTGAGCCTCCTACAGAGGAGGCTGTTGAATCATTGTTTGATCGATT ATTTTTCAGTGATTCTACCTATGATTTATCTCGTGTGGGAAGAATGAAGATAAATAGTAGGCTTGGTCGTGAATACTTGG ATGATAAAACCATACTAACTAGTGAGGATATCCTTGATATTATAAAGTTATTAGTTAATTTGCGTAATGGACATGGAAGT ATAGATGATATAGACCATCTTGGAAATCGGAGAGTTAGGTGTGTCGGAGAATTGACTGAAAATCAGTTCAGATCTGGTTT AGTTAGAGTTGAAAGGGCCGTTAAGGAAAGACTAGGTCAGGCAGAGGCTGATAATTTAATGCCTCACGATTTGATAAATT CAAAACCAATTTCTGCAGCTATAAAAGAATTTTTTGGCTCCAGTCAGCTTTCTCAGTTTATGGATCAAACTAATCCTTTA TCAGAGGTTACACATAAGCGTCGTGTTTCAGCATTGGGGCCTGGAGGGTTGACTAGAGATAGAGCTGGGTTTGAAGTGCG AGATGTTCATCCAACTCATTACGGTAGAGTTTGCCCAATAGAAACTCCTGAGGGTCCTAATATCGGTCTTATAAATTCTA TGTCTTTATATGCCCGTTTAAATGAATATGGTTTTCTGGAAACACCATATAGAAAAGTTCTAAATGGTAAAGTTAGTGAT CAAATTGATTATCTTTCAGCTATAGAAGAAAGTAATTATGTTATTGCTCAGGCTAATGCAGAGTTAAATAAAGAAGGTTT TTTTACAGATGAGCTGGTTGCTTGTAGAGAATCTGGTGAGACTTTATTAACTTCTCCAGGTAATGTTCATTATATGGATG TGGCTCCTTCTCAAATAGTATCGGTCGCTGCTTCATTAATTCCTTTCTTGGAGCACGATGATGCGAATCGAGCTCTTATG GGTGCTAATATGCAAAGGCAAGCAGTTCCTTGTTTGCGTCCAGAAAAGCCTATCGTTGGTACTGGTCTTGAACGCATAGT AGCTGTTGACTCTGGAACAACAGTTCAGGCCTTAAGGGGTGGTCTAGTTGATTATGTTGATGCTGAACGTATAGTTATTA GAGTGAATGATTCAGAAAACATAGCAGGAGAGGTTGGTGTTGATATATATAATCTCATTAAATATACCAGATCAAATCAA AATACTAATATAAATCAACGTCCAATTGTAAGACTTGGTGACAATATATCAAAAGGTGATGTTTTGGCTGACAGTGCCTC AACAGATCTAGGGGAGCTTGCTCTAGGACAGAATATGTTAATCGCTTTTATGCCTTGGAATGGTTACAATTTTGAAGATT CAATTCTTATTTCAGAAAAGGTTGTCTCTGATGATAGGTATACGTCTGTTCATATAGAAGAATTAACTGTCGTTTCAAGG GACACTAAGCTAGGTCCAGAAGATATTACTAGAGATATTAGTAATCTTTCCGAAGTACAATTAAATAGATTGGATGATTC TGGTATTATTTGTATAGGTGCTGAAGTTGGTCCTGATGATGTTTTAGTTGGCAAGGTTACCCCAAAGGGAGAGACTCAAT TAACACCAGAAGAAAAATTACTAAGAGCAATCTTTGGAGAGAAGGCATCTGATGTGAAGGATACTTCTTTGAGAGTTCCT TCTGGAATGAGTGGTACTGTAATAGACGTTAGAGTTTTTACTAGAGAAGGTGTTGTAAGAGATAATAGAGCTCAATCTAT TATTGATGATGATCTTAAAAAGTATCGTCAAGATTTAAATGATCGTTTGCGTATAGTTGAAAAAGATCAGTTTGATAGGA TTGAAAAAGTATTGGTCGGTCAGATAGCTAATGGAGGCCCTTTAAAATTATTAAAAGGATCTTTGATTACTAAGGACTAT CTTAAATCTATTGATCATTGGTACTGGTTTGATATTCGTCTTGAATCAGAAGATGCTGCTAGTATATTAGAGCAAGCAAA ATATTCTCTTGATCAGGAACGAAAACAGTTTGATTCTTTATTTGAAGAGAAGAAGAAGAAATTAACACAAGGTGATGAGT TGCCTCCCGGTGTTTTGAAGATGGTGAAAGTATACTTGGCTGTAAAGCGTAGACTACAACCTGGCGATAAAATGGCTGGC AGACATGGTAACAAAGGTGTTGTTTCTAGAATTATTCCAGTTGAGGATATGCCTTATATGGCTGATGGAACGCCAGTTGA TATTGTTCTAAATCCTTTAGGCGTTCCTTCTAGGATGAATGTTGGTCAGGTTTTAGAAGTTCATCTAGGATGGGCTGCTA AGGGTATAGGAGCTCGGATCAGTGATGTCCTTAATTCTGAATTGAAACATCAGTCCTCAAAAATTAGGGAATATTTAAGT AGTATTTATAAATCTAATATTGTCTCTATAGATAGTTTGACTGATAGTGAGATTTTAGAATTGGCTAATAATTTGAAACC AGGTTTGCCTGTTTCTACTCCTGTTTTTGATGGGGTCAATGAAAAAGAAATTCATGATCTGCTAAATATAGCTTACCCAG ATAATATTGCTGATAAAATGCAACTAACTAAATCTAGAGCTCAGTCTTGGTTATTTGATGGTAGGACTGGTGAAAAGTTT GAACGACCTGTTACTGTTGGGTATATGTACTATTTGAAATTACATCATTTGGTCGATGATAAGATGCATGCGAGATCCAT AGGTCCGTACTCTTTGGTTACTCAACAACCTTTAGGAGGTAAAGCGCAATTCGGTGGTCAGCGTTTTGGCGAAATGGAGG TTTGGGCTTTGGAGGCTTATGGTGCGGCTTATACATTGCAAGAAATGTTGACAGTGAAATCTGATGATATTTCTGGAAGG ACTAAGGTTTATGAAAGCATAGTTAAGGGAGATCATTTAATTGATGCTGGAATGCCTGAATCCTTTAATGTTCTTGTTAA AGAAATTCGTTCTTTAGGTTTGGATATAGATTTGGAGCGTAACTAA Protein sequence : MRSVDGLQAAFLSIFPIISHNGSACLEFVSYSLGDPIFDVKECQQRGLSYASPLRAKLRLVLIDKDSNKSNIKEVKEQEV YMGEIPLMTSSGSFIINGTERVVVSQLHRSPGVFFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDILFFRIDRRR KMPVTILLKAIGFLDEFILSYFFDFDSFELKSNCSVLEFIPDRWKGEVASFDIVDKEGNIIVEKDKRISSRSIRLISQSN INAITVSDDFLLSRVVAENIIDPETGEVLVHANEEISEQTLETLRDSGVKNIRTLYTNDLDRGAYISQTLRIDETVDQMS AKIAIYRMMRPGEPPTEEAVESLFDRLFFSDSTYDLSRVGRMKINSRLGREYLDDKTILTSEDILDIIKLLVNLRNGHGS IDDIDHLGNRRVRCVGELTENQFRSGLVRVERAVKERLGQAEADNLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPL SEVTHKRRVSALGPGGLTRDRAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMSLYARLNEYGFLETPYRKVLNGKVSD QIDYLSAIEESNYVIAQANAELNKEGFFTDELVACRESGETLLTSPGNVHYMDVAPSQIVSVAASLIPFLEHDDANRALM GANMQRQAVPCLRPEKPIVGTGLERIVAVDSGTTVQALRGGLVDYVDAERIVIRVNDSENIAGEVGVDIYNLIKYTRSNQ NTNINQRPIVRLGDNISKGDVLADSASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVSDDRYTSVHIEELTVVSR DTKLGPEDITRDISNLSEVQLNRLDDSGIICIGAEVGPDDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVP SGMSGTVIDVRVFTREGVVRDNRAQSIIDDDLKKYRQDLNDRLRIVEKDQFDRIEKVLVGQIANGGPLKLLKGSLITKDY LKSIDHWYWFDIRLESEDAASILEQAKYSLDQERKQFDSLFEEKKKKLTQGDELPPGVLKMVKVYLAVKRRLQPGDKMAG RHGNKGVVSRIIPVEDMPYMADGTPVDIVLNPLGVPSRMNVGQVLEVHLGWAAKGIGARISDVLNSELKHQSSKIREYLS SIYKSNIVSIDSLTDSEILELANNLKPGLPVSTPVFDGVNEKEIHDLLNIAYPDNIADKMQLTKSRAQSWLFDGRTGEKF ERPVTVGYMYYLKLHHLVDDKMHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDISGR TKVYESIVKGDHLIDAGMPESFNVLVKEIRSLGLDIDLERN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 63 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_007183421.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 81 |
| rpoB | YP_007183421.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 73 |
| rpoB | YP_007183421.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 72 |
| rpoB | YP_007183421.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 66 |
| rpoB | YP_007183421.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 65 |
| rpoB | YP_007183421.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 65 |
| rpoB | YP_007183421.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 65 |
| rpoB | YP_007183421.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 65 |
| rpoB | YP_007183421.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 65 |
| rpoB | YP_007183421.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 64 |
| rpoB | YP_007183421.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 64 |
| rpoB | YP_007183421.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 64 |
| rpoB | YP_007183421.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 63 |
| rpoB | YP_007183421.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 63 |
| rpoB | YP_007183421.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 63 |
| rpoB | YP_007183421.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 63 |
| rpoB | YP_007183421.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 63 |
