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Name : rpoB (CKCE_0593) Accession : YP_007184542.1 Strain : Candidatus Kinetoplastibacterium crithidii Genome accession: NC_019815 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 616519 - 620628 bp Length : 4110 bp Strand : - Note : identified by sequence similarity; putative DNA sequence : ATGCCTTATTCGTATACCGAAAAAAAGCGCATTCGTAAAAGCTTTGCTAAGCGTGCAGATGTACAGAAAATTCCATGTTT ATTGGAAACTCAACTGCAATCTTATCAAACTTTTTTACAGTTTGAGGTTGACTCTTTAAAGCGTTCAGTTCATGGTTTGC AGGCCGCTTTTTTGTCGATCTTTCCAATAGTTAGTCATAATGAACTTGCTAGATTGGAGTTTGTTAGTTATGAGCTTGGT AAGCCTGTTTTTGATGTAAGAGAATGTCAACAGCGCGGTTTATCATTTGCTTCTCCTTTGCGTGCTAAATTACGTTTAGT GCTAATGGATAGGGAATCTAGTAAACATGTTATGAAAGAAGTTAAAGAGCAGGAGGTCTATATGGGAGAAATTCCGTTAA TGACTTCTTCTGGCTCTTTCATCATCAATGGTACGGAGCGTGTTGTTGTTTCGCAATTACATCGCTCTCCAGGTGTCTTT TTCGAGCATGATAAGGGGAAAACCCATAGTTCTGGTAAATTGCTTTTTTCAGCAAGAATTATTCCTTATAGAGGATCTTG GCTTGATTTTGAGTTTGATCCTAAAGATATTTTATTTTTCCGTATAGACCGTCGTCGTAAGATGCCTGTGACTATTTTGC TTAAGGCAATTGGTTTTTCGCCTGAGTTTATACTATCTTATTTCTTTGATTCAGATGTATTTGCTTTAAACGAAACAGGT GCTATTTTAGAATTTATTCCTGATAGGTGGAAAGGTGAGGTTGTTAGTTTTGATATATCTGACAAACATGGCGTCATCAT AGTAGAGAAAGATAAGCGTATTAATTCAAAGCACCTCAGAGAAATATCAAAACAAGGAATAAAACAGATTCTAGTTAAGG ATGATTTCTTAGTTGGTAGGGTTTTATCTGCTAATGTTATTGATCCAGAAACAGGAGAATTAGTTGCTAATGTAAATGAT GAAATTACTGAAACTGTATTAGAGTCATTAAGAAAACATGGTATTAAATCAATTAAAACTTTATATATAAATGATTTAAA TAGAGGTTCTTATATTTCTCAAACATTACGTATCGACGAGACTGTGGATCAACTTTCTGCAAGAATTGCTATTTATCGTA TGATGCGTCCTGGGGAACCACCAACTGAAGAGGCTGTAAATGCTCTTCTTGAACGTCTGTTTTTTAACGATATAACCTAT GATTTATCTAGAGTTGGTCGTATGAAACTAAATAGTCGTCTTAATAGAGATAAAGATTCTTGCGGTTCTTCCACAACACT TACTAATGATGATATTTTAGAATCTATAAAGGTTTTAGTTGATTTGCGTAATGGTTATGGCCAAGTCGATGATATTGATC ATCTCGGAAATAGAAGGGTGAGATGTGTTGGCGAGTTAACTGAAAATCAATTTAGATCTGGTCTTGTTAGAGTTGAAAGA GCTGTTAGAGAGAGATTAGGACAGGCTGAGATAGATAGTTTAATGCCGCATGATTTAATAAATTCAAAACCAATTTCTGC TGCTATAAAGGAGTTTTTTGGATCTAGTCAATTATCTCAATTTATGGATCAAACTAATCCTTTATCTGAGGTTACACACA AGCGAAGAGTATCTGCTTTGGGACCTGGTGGTTTAACTAGGGAACGTGCTGGCTTTGAGGTTAGAGATGTACATCCTACT CATTATGGTCGAGTCTGTCCTATAGAAACTCCAGAGGGTCCTAATATAGGGCTTATAAACTCTATGTCTTTATATGCTCG TTTAAATGATTATGGATTTTTAGAAACACCTTATCGCAAAGTTATAGATGGTCAAGTTACAGATCAAATAGATTATTTAT CAGCTATTGAAGAAAGTAAGTATGTTATTGCTCAGGCCAATGCAGAATTAGATAGTAATAATTATTTTATTGATGATCTA ATAGCATGCAGAGAGTCAGGAGAAACACTTCTTACTTCTTCCAAAAGCATTCATTATATGGATGTGGCTCCTTCCCAAAT AGTTTCAGTTGCTGCGTCATTGATTCCATTTTTAGAGCATGATGATGCTAATAGAGCGTTAATGGGAGCTAATATGCAGA GGCAGGCTGTTCCTTGTTTGATGCCAGAAAAACCAATTGTTGGTACTGGTATTGAGAGGATAGTTGCCGTTGATTCTGGA ACTACAGTTCAGGCATTGCGTGGAGGTTTTGTTGATTATGTTGATGCTGATCGTATTGTAATTAAGGTCCATGATTCTGA AAATAATGATGGTGAAGTTGGAGTGGACATATATAATTTGAATAAGTATTCAAGGTCCAATCAAAATACAAATGTCAACC AAAGACCAATAGTTAAGTTTGGTGATAATGTTTCGAAAGGAGATGTACTAGCAGATGGTGCTTCTACAGATCTTGGTGAG CTTGCATTAGGTCAGAATATGTTGGTGGCTTTTATGCCTTGGAATGGTTATAACTTTGAAGATTCTATATTAATTTCTGA AAAGGTTGTTTCTGATGATAGATACACCTCAATTCATATTGAGGAACTAACTGTTGTTGCGAGAGATACTAAGCTTGGGC CAGAAGAAATTACAAGGGATATTAGTAATTTATCTGAAGTTCAATTAAATCGGTTGGATGATTCTGGTATTACTTATATT GGGGCAGAGGTTGCAGCTGGCGATGTCTTAGTTGGCAAGATAACTCCTAAGGGAGAAACACAATTAACCCCAGAAGAGAA ATTATTAAGAGCTATTTTTGGAGAAAAAGCTTCTGATGTGAAGGATACTTCTTTGCGTGTTCCATCAGGAATGAGCGGAA CAGTAATTGATGTGCAGTTATTTACTAGGGAAGGAGTGATTCGTGATAATAGAGCTCAATCTATTATTGATTACGATTTA CATAAATATCGACAAGATTTGAATGATCAGCTACGTATTGTTGAGAAAGATCAGTTTTCTAGATTAGAGAAGGTATTGAT TGGTAAAAAAGTAAATGGAGGTCCTTATGGTTTAGTGAAGGATTCTATTATTACTAAAGAATATTTAGACTCTTTAGATA AGTGGTTTTGGTTTGATATTCGTCTTACAGAAGATAAGTATGCTTCGTTATTAGAACAAGTAAAATTATCTCTTGAAGAT AAAAGAAAGCAATTTGATATTTACTTTGAAGAAAAACGTAAAAAATTAACCCAGGGAGATGAATTGCCACCTGGTGTTAT GAAAATGGTAAAGGTTTATCTTGCTGTTAAGAGGAGATTACAGCCTGGTGATAAAATGGCTGGCAGGCATGGTAATAAGG GTGTTGTTTCTAGAATTGTTCCTGTTGAGGATATGCCTCATATGGCTGATGGAACGCCTGTTGATATTGTGCTTAATCCT CTAGGTGTTCCATCTAGAATGAATGTTGGTCAAGTTTTAGAAGTTCATCTTGGTTGGGCTGCTAAAGGCATTGGTCAAAG AATCAATGATCTTTTGTCATATGAGAAGAAAACAGAAGAAATTCGTTCTTATATGAATAAGATTTATAATTGTGGAGGGG CAAATGTGGATCTTAATCAGTTGAATAATAAAGAAATTCTAGAGCTTGCTCATAATTTAAAAAATGGTTTGACTGTTGCT ACCCCTGTTTTTGATGGTGTAAATGAGGATGAAATATCTCAATTATTGTCTTTAGCTTATCCAGATGATGTTGCTGAAAA AATTCAGTTAACGAATTCTAGAACTCAAGCATGGTTATTTGACGGCCGCACTGGTGACAAATTTGAGAGACCAGTTACAA TTGGTTATATGCATTATTTAAAATTACACCATTTAGTTGATGATAAGATGCATGCTAGATCTACTGGGCCTTATTCTTTA GTTACTCAACAGCCTCTTGGTGGTAAAGCGCAGTGTGGTGGTCAACGCTTTGGTGAGATGGAAGTATGGGCTTTAGAGGC ATATGGTGCTGCTTATACTCTTCAGGAAATGTTGACTGTTAAATCAGATGATATAACTGGAAGAACTAAAGTTTATGAAA GCATTGTTAAAGGCGATCATTTAATAAATGCAGGTATGCCAGAGTCTTTTAATGTATTAGTAAAAGAAATTCGTTCTTTG GGTTTGGATATAGATTTGGAGCGTAACTAA Protein sequence : MPYSYTEKKRIRKSFAKRADVQKIPCLLETQLQSYQTFLQFEVDSLKRSVHGLQAAFLSIFPIVSHNELARLEFVSYELG KPVFDVRECQQRGLSFASPLRAKLRLVLMDRESSKHVMKEVKEQEVYMGEIPLMTSSGSFIINGTERVVVSQLHRSPGVF FEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDILFFRIDRRRKMPVTILLKAIGFSPEFILSYFFDSDVFALNETG AILEFIPDRWKGEVVSFDISDKHGVIIVEKDKRINSKHLREISKQGIKQILVKDDFLVGRVLSANVIDPETGELVANVND EITETVLESLRKHGIKSIKTLYINDLNRGSYISQTLRIDETVDQLSARIAIYRMMRPGEPPTEEAVNALLERLFFNDITY DLSRVGRMKLNSRLNRDKDSCGSSTTLTNDDILESIKVLVDLRNGYGQVDDIDHLGNRRVRCVGELTENQFRSGLVRVER AVRERLGQAEIDSLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPT HYGRVCPIETPEGPNIGLINSMSLYARLNDYGFLETPYRKVIDGQVTDQIDYLSAIEESKYVIAQANAELDSNNYFIDDL IACRESGETLLTSSKSIHYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLMPEKPIVGTGIERIVAVDSG TTVQALRGGFVDYVDADRIVIKVHDSENNDGEVGVDIYNLNKYSRSNQNTNVNQRPIVKFGDNVSKGDVLADGASTDLGE LALGQNMLVAFMPWNGYNFEDSILISEKVVSDDRYTSIHIEELTVVARDTKLGPEEITRDISNLSEVQLNRLDDSGITYI GAEVAAGDVLVGKITPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQLFTREGVIRDNRAQSIIDYDL HKYRQDLNDQLRIVEKDQFSRLEKVLIGKKVNGGPYGLVKDSIITKEYLDSLDKWFWFDIRLTEDKYASLLEQVKLSLED KRKQFDIYFEEKRKKLTQGDELPPGVMKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSRIVPVEDMPHMADGTPVDIVLNP LGVPSRMNVGQVLEVHLGWAAKGIGQRINDLLSYEKKTEEIRSYMNKIYNCGGANVDLNQLNNKEILELAHNLKNGLTVA TPVFDGVNEDEISQLLSLAYPDDVAEKIQLTNSRTQAWLFDGRTGDKFERPVTIGYMHYLKLHHLVDDKMHARSTGPYSL VTQQPLGGKAQCGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDITGRTKVYESIVKGDHLINAGMPESFNVLVKEIRSL GLDIDLERN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 62 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 62 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_007184542.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 80 |
| rpoB | YP_007184542.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 72 |
| rpoB | YP_007184542.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 71 |
| rpoB | YP_007184542.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 65 |
| rpoB | YP_007184542.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 65 |
| rpoB | YP_007184542.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 64 |
| rpoB | YP_007184542.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 64 |
| rpoB | YP_007184542.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 63 |
| rpoB | YP_007184542.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 63 |
| rpoB | YP_007184542.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 63 |
| rpoB | YP_007184542.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 63 |
| rpoB | YP_007184542.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 62 |
| rpoB | YP_007184542.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 62 |
| rpoB | YP_007184542.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 62 |
| rpoB | YP_007184542.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 62 |
| rpoB | YP_007184542.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 62 |
| rpoB | YP_007184542.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 62 |
