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Name : rpoB [H] (TVNIR_2581) Accession : YP_007217703.1 Strain : Thioalkalivibrio nitratireducens DSM 14787 Genome accession: NC_019902 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta subunit Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 2667227 - 2671303 bp Length : 4077 bp Strand : - Note : - DNA sequence : ATGGCCCTCAGTTATACCGAAAAAAAACGCATCCGCAAGGATTTTGGCAAGCGCCCCCAGATTCTTGAGGTTCCCTACCT GCTCGAGACCCAGCTCGCGTCGTATCGCGACTTCCTGCAGGACAGCCTGCCGGCCGAAAGCCGCGCGGCGAAGGGTCTGC ATGCCGCGTTTCAGTCGGTATTCCCGATCGTCAGCTACTCGGGTCACGTGCAGCTGGAGTACGTCAGTTACCGCCTCGGC GAACCGATGTTCGACGTGAAGGAATGCCAGATCCGCGGTGTGACCTATGCCGCACCGCTGCGGGTGATGCTGCGCCTCGT GATCCACGACAAGGAGGCACCTGCGGGCAGCACGGTGGTCAAGGAAGTGAAGGAGCAGGAGGTCTACATGGGTGAACTGC CCCTGATGACCGAGAACGGCACTTTCGTGATCAACGGCACCGAGCGCGTCATCGTGTCGCAGCTGCATCGCCCGCCCGGC GTGTTCTTCGATCACGACAAGGGTAAGACCCACAGCTCGCAGAAGCTGCTGTTCAATGCCCGGATCATCCCGTACCGGGG ATCGTGGTTGGATTTCGAATTCGACGCGAAGGACATCGTGTTCGTGCGCATCGACCGGCGCCGCAAGCTGCCGGCCACGG TGCTGCTGCGCGCACTGGGTATGGACGCCGAGCAGGTGCTGCAGACGTTCTTCGAGTTCAATACCGTTCGGCTGCAGGAG AGCGGCGCGTCGCTGGAGCTGATTCCGGAACGCCTGCGTGGCGAGAATGCGGTGGTCGACATCCGCGACGGTGACCGCGT GATCGTCGAGGCGGGGCGGCGCATCACCCCGCGGCACATTCGCGAGGTCGAAAAGGCCGGAATCCGCACGCTGGACGTGC CCGACGACTACCTGATCGGGCGTGCACTGGCGCGCAACGTCGTCGACGAGGAGACGGGCGAAGTCCTCGCCGATGCCAAT GAGGTGATCACCGAGGGCCTGCTCGACAAGCTGCGCGACCAGCGCGTCGCCGAGTTCGCGATCATCTACACCAACGATTA CGACCGCGGATCGTTCATCTCCGACACCCTGCGCCTGGATTCCACGCGCACGCAGCTCGAGGCGCAGGTGGAAATCTACC GCGTGATGCGCCCGGGCGAACCCCCGACCAAGGATGCGGCCGAGAACCTGTTCGGCAACCTGTTCTTCTCCGAGGAGCGT TACGACCTGTCCGCGGTCGGGCGGATGAAGTTCAACCGGCGCGTCGGCCGCGACACCGACGAGGGCGAGGGGGTGCTCTC GCCCGATGATATCCTCGACGTGCTGAAGGTCCTGATCGACCTGCGCAACGGGATCGGTACCACCGACGATATCGATCACC TCGGCAACCGTCGCATCCGCAGTGTCGGCGAGATGGCCGAGAACCAGTTCCGGCTCGGCCTGGTGCGGGTGGAGCGCGCG GTGAAGGAGCGCCTGACCGTTGCCGAGAGCGAGGGGCTGATGCCGCAGGAACTGATCAACGCGAAGCCGGTGGCGGCGGC GGTCAAGGAGTTCTTCGGCTCGTCGCAGCTGTCGCAGTTCATGGATCAGAACAACCCGTTGTCCGAGGTCACGCACAAGC GTCGGATCTCTGCACTCGGCCCCGGCGGTCTGACCCGCGAGCGGGCCGGGTTCGAAGTGCGCGACGTGCATCCGACGCAT TACGGCCGCGTCTGCCCGATCGAGACCCCGGAAGGGCCAAACATCGGCCTGATCAATTCCCTTGCCGTGTATGCGCGCAC CAACCGGTACGGCTTCCTCGAGACCCCGTACCGCAAGGTGGACGGCGGGCAGGTCACCGACGAGATCGTCTACTTGTCGG CAATCGAGGAGAGCCAGTACGTGATCGCGCAGGCCAACGCCGCGATGGACCAGCAGGGCCGGCTGACCGACGATCTGGTG TCCTGCCGCTACCAAAACGAGTTCACGATCTCGACGCCGGACAAGATCCAGTTCATGGACGTGTCACCGAAGCAGATCGT GTCGGTGGCGGCCGCGCTGGTCCCGTTCCTCGAGCACGACGACGCGAACCGCGCGCTGATGGGCTCGAACATGCAGCGCC AGGCCGTGCCCTGCCTGCGCGCCGAAAAGCCGTTGGTCGGGACCGGCATCGAGCGGACCGTCGCAATCGATTCCGGATCC TCGATCGTGGCCCGTCGCGGCGGCACGGTGGATTCGGTCGACGCGGCGCGGATCGTGGTGCGCGTGAACGACGACGAGAC CGCCGCCGGCGAACCCGGGGTCGACATCTACAACCTGACCAAGTACGCCCGTTCCAACCAGAACACCTGCATCAATCAGC GCCCGCTGGTGAGCGTGGGTGACCGGCTCGCACGCGGCGATGTGCTGGCCGACGGGTCCTCGACCGACATGGGCGAGCTG GCGCTGGGCCAGAACATGATGGTCGCGTTCATGCCCTGGAACGGCTACAACTTCGAGGACTCGATCCTGATCTCGGAGCG GGTGGTGCAGGAGGACCGGTTCACGACCATCCATATCGAGGAGTTGAACTGCGTCGCGCGCGATACCAAGCTGGGGCAGG AGGAGATCACTGCGGACATCCCGAACGTTTCCGAGTCGCTGCTTGCGAAGCTGGACGAATCCGGCATCGTCTACGTCGGT GCCGAGGTCCGGCCCGGCGACATCCTGGTCGGCAAGGTAACCCCGAAGGGTGAAACCCAGCTGACGCCGGAAGAGAAACT CCTGCGCGCGATTTTCGGCGAGAAGGCGTCGGACGTGAAGGATACGTCGCTGCGCGTGCCCTCGGGCATCGAGGGCACGG TGATCGACGTCCGTGTGTTCACCCGCGACGGGGTGGAAAAGGACGCACGCGCGCGTTCGATCGAGGAATCGGACCTGGCC GGGGTACGCAAGGATCTGCGCGACCAGCAGCGTATCTATGAGGAGGATATCTACGCCCGGGTGGAACGGCTTCTGCTCAA CAAGGTGGCGGCCGGCGGTCCCGACGGGCTCGCCGATGGCAGCAAGGTCACGAAAAAGTACCTGGCCGGGCTGTCGCGCA ACCACTGGTTCGAGGTCCGCCTGCGCGACGACGAGGGCAACGCCCAGCTCGAGGAACTCGGGCGCCAGCTCGAGGAGCAG GCCGAGGCCTTCGAGAAGCGCTTCGAGCACCAGAAGGCCAAGCTGGCCGCCGGTGACGACCTGCCTCCGGGCGTGCAGAA GATGGTCAAAGTCTACGTCGCGGTGAAACGGCGGATGCAGCCGGGCGACAAGATGGCCGGCCGGCACGGCAACAAGGGCG TGATCTCGATGATCGTGCCCGAAGAGGACATGCCCTTCCTCGAGGACGGAACCCCGGTGGACATCGTGCTCAACCCGCTG GGCGTGCCCTCGCGGATGAATGTCGGGCAGGTGCTGGAAGTTCACCTCGGCTGGGCGGCCAAGGGCCTTGGGCAGAAGAT CGCCCGGATGCTGGAAGCACAGGCCGAGATCGCGCGGCTGCGCGAGTTCCTGGCGGAGATCTACGCCCGCGGCGAGCGCA AGGTGGACCTCGATACGCTCTCCGACACCGAGATCCTGAACCTCTCCCGGAATCTGCGTGGCGGTGTGCCGATGGCGACG CCGGTGTTCGACGGCGCGCACGAGACGGAAATCAAGGCGATGCTTCGTCTCGCGGATCTTCCCGAGACCGGCCAGGCGGT GCTCTACGATGGCCGCACCGGCGATTCCTTCGACCGGCCGGTGACCGTCGGCTACATGCACATGCTGAAGCTCAACCACC TGGTCGACGACAAGATGCATGCCCGTTCCACCGGTCCGTACTCGCTGGTCACGCAGCAGCCGCTCGGCGGCAAGGCCCAG TTCGGCGGCCAGCGTTTCGGGGAGATGGAGGTTTGGGCGCTGGAGGCCTACGGTGCCGCCTACACCCTGCAGGAGATGCT GACCGTGAAGGCCGATGACGTGCAGGGCCGTAACAAGATGTACAAGAACATCGTCGATGGCGAACACTACATGGAGGCGA ACGTGCCCGAGTCCTTCAACGTATTGATGAAGGAAATCCGTGCGCTCGGCATCAACATCGAGCTGGAACAGGACTGA Protein sequence : MALSYTEKKRIRKDFGKRPQILEVPYLLETQLASYRDFLQDSLPAESRAAKGLHAAFQSVFPIVSYSGHVQLEYVSYRLG EPMFDVKECQIRGVTYAAPLRVMLRLVIHDKEAPAGSTVVKEVKEQEVYMGELPLMTENGTFVINGTERVIVSQLHRPPG VFFDHDKGKTHSSQKLLFNARIIPYRGSWLDFEFDAKDIVFVRIDRRRKLPATVLLRALGMDAEQVLQTFFEFNTVRLQE SGASLELIPERLRGENAVVDIRDGDRVIVEAGRRITPRHIREVEKAGIRTLDVPDDYLIGRALARNVVDEETGEVLADAN EVITEGLLDKLRDQRVAEFAIIYTNDYDRGSFISDTLRLDSTRTQLEAQVEIYRVMRPGEPPTKDAAENLFGNLFFSEER YDLSAVGRMKFNRRVGRDTDEGEGVLSPDDILDVLKVLIDLRNGIGTTDDIDHLGNRRIRSVGEMAENQFRLGLVRVERA VKERLTVAESEGLMPQELINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTH YGRVCPIETPEGPNIGLINSLAVYARTNRYGFLETPYRKVDGGQVTDEIVYLSAIEESQYVIAQANAAMDQQGRLTDDLV SCRYQNEFTISTPDKIQFMDVSPKQIVSVAAALVPFLEHDDANRALMGSNMQRQAVPCLRAEKPLVGTGIERTVAIDSGS SIVARRGGTVDSVDAARIVVRVNDDETAAGEPGVDIYNLTKYARSNQNTCINQRPLVSVGDRLARGDVLADGSSTDMGEL ALGQNMMVAFMPWNGYNFEDSILISERVVQEDRFTTIHIEELNCVARDTKLGQEEITADIPNVSESLLAKLDESGIVYVG AEVRPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGIEGTVIDVRVFTRDGVEKDARARSIEESDLA GVRKDLRDQQRIYEEDIYARVERLLLNKVAAGGPDGLADGSKVTKKYLAGLSRNHWFEVRLRDDEGNAQLEELGRQLEEQ AEAFEKRFEHQKAKLAAGDDLPPGVQKMVKVYVAVKRRMQPGDKMAGRHGNKGVISMIVPEEDMPFLEDGTPVDIVLNPL GVPSRMNVGQVLEVHLGWAAKGLGQKIARMLEAQAEIARLREFLAEIYARGERKVDLDTLSDTEILNLSRNLRGGVPMAT PVFDGAHETEIKAMLRLADLPETGQAVLYDGRTGDSFDRPVTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQ FGGQRFGEMEVWALEAYGAAYTLQEMLTVKADDVQGRNKMYKNIVDGEHYMEANVPESFNVLMKEIRALGINIELEQD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 69 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 72 |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 70 |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 70 |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 70 |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 70 |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 70 |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 70 |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 69 |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 69 |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 69 |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 69 |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 69 |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 69 |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 68 |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 67 |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 66 |
| rpoB [H] | YP_007217703.1 | DNA-directed RNA polymerase beta subunit | NC_012469.1.7686402. | Protein | 0.0 | 45 |
