|
Name : B479_14115 (B479_14115) Accession : YP_007229660.1 Strain : Pseudomonas putida PC9 Genome accession: NC_019905 Putative virulence/resistance : Virulence Product : type VI secretion ATPase Function : - COG functional category : - COG ID : - EC number : - Position : 3101111 - 3103708 bp Length : 2598 bp Strand : + Note : COG0542 ATPases with chaperone activity, ATP-binding subunit DNA sequence : GTGAACCTGAAGTCTCTGTTCGCCAAGCTCAACGAAACCAGCCGCACGGCCACGGAAAGCGCGGCGGCCCTGTGCCTGTC GGAGCACCATTACGACGTGGAGGTGGAGCATCTGCTGCTGCAGTTGCTCGATAACAGCGACAGCGACCTGGCGCCGATCC TGCGCCACTACGAAGTAGTCGCCGAGCGCTTGCAGGCGCAGCTGGTCACGGCCCTGGGCACCTTCAAGAAAGGTAATACC CGCACCCCGGCGCTGTCGCCGCACATCACCCGCATGATCGAACAGGCCTGGTTGCTGGCGTCGATCGAATACGGCGTCGG CCAGGTGCGCAGCGCTCACCTGCTGCAGGCCCTGCTCGACGATGCCGAACTGCGTCGCGTGGTGATCGCCTCGGCGCCGG AGCTGGAGAAAATCAACGCCGATGACCTGCGCCTGAACCTTGCCGCGCTGGTGGAAGGCAGCGCCGAGTCCCGGCAGGCC AGCCCGCTGGCCAGCCCGGCAGCGCCAGTGAACAGTGCGAGCAAGGCCGGCGGCAAGACCCCGGCGCTGGACCAGTACAC GGTCAACCTCACCCAGAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGGGCCGCGAGTTCGAAGTAAGGCAGATGGTCG ATATCCTTACCCGTCGCCGCCAGAACAACCCGATCCTCACGGGCGAGGCCGGGGTCGGCAAAACCGCCGTGGTCGAAGGC CTGGCCCTGCGCATCGCCCAAGGTGACGTGCCGGCGGTGCTCAAGGATGTGGCCCTGCACACCCTCGACCTGGGCCTGCT GCAGGCCGGCGCCGGGGTCAAGGGCGAGTTCGAGAACCGCCTCAAGGCAGTGATCGAAGAGGTCAAACGCAGCCTGCACC CGATCATCCTGTTCATCGACGAAGCCCACACTTTGATCGGTTCCGGTGGCCAGGCCGGGCAGAACGATGCCGCCAACCTG CTCAAGCCGGCCCTTGCCCGTGGCGAGCTGCGCACCATCGCCGCCACTACCTGGGCCGAATACAAGAAGTACTTCGAGAA GGACGCCGCCCTCGCCCGCCGCTTCCAGGTGGTCAAGGTGGAAGAACCCGACGAAGACAAAGCCATCCACATGCTGCGCG GCCTGCTCGGCAAGATGCGCGAACACCACAAGGTAGCGGTGATGGACGAAGCGCTGGTGCAGGCCGTGCGCCTGTCCAAC CGCTACATCACCGGCCGCCAGCTGCCCGACAAGGCGGTCAGCGTGCTCGACACCGCCTGCGCGCGCATTGCCCTGGCGCA ATCGTCGCAACCTGGCGCCCTGGAAGACTGCCGCCGCCAGATCGACAACCTGCAGGCCGAAATCGCCGTGCTCGGCCACG AAGCCGGCAAAGGCCACGACCACACTCGCCGCCTGGGCGAGCTGCAGGCTGCCCTGCAGGCCGAGCAGCAGCGGGAGCAG CAGTTGAACACGCAGTGGCAACAGGAGCTGGAACTGGTCGAACAGCTCAAGGCGCTGGACGCCGCCAGCGAGGCCGATGC CAAGCAGCTCAACGCCCTGCGTGCCGAACTGGCCCGCGTGCAAGGCGACCAGCCTCTGGTCCATGCCCTGGTCGACAGCG GCGCCATCGCCCAGGTCATCAGCGGCTGGACCGGTATCCCGCTGGGCAAGATGCTGCGTGACGAGATCGACACCGTGCAG CGCCTGCCGGCCCTGCTTGGTGAGCGCGTGCTGGGCCAGGACCACGCCCTGCACGAAATCGGCAAGCGCATCAAGATTTC CCGCGCACGCATGGAAGACCCGAACAAACCGATCGGTGTGTTCCTGCTGCTCGGCCCCAGCGGCGTCGGCAAGACCGAAA CCGCCCTGGCCCTGGCCGATACCCTGTACGGCGGTGAACGCAACCTCATCACCATCAACATGTCCGAGTACCAGGAAGCC CACACCGTTTCGAGCCTCAAGGGCTCGCCTCCGGGCTATGTCGGCTACGGCGAAGGCGGCGTGCTGACCGAGGCGGTGCG TCGCAAGCCGTACAGCGTGGTGTTGCTCGACGAGGTGGAAAAAGCCCACCCCGACGTGCTCGAACTGTTCTTCCAGGTGT TCGACAAGGGCGTGCTGGACGATGGCGAAGGCCGCGAGATCAATTTCCGCAACACGGTGATCATCCTCACTTCCAATACC GGTACCGAGCGCATCATGCAGACCTGCCTGAACGCCACCGAGCTGCCGACGCCCGCAGCGATCGTCGAAGACCTGCGTGA CCAGCTCAACCATGTGTTCAAGCCGGCCTTCCTCGGCCGCCTGAGCATCGTGCCGTTCTACCCGGTGCAGGACCAGATCC TCGAGCGCATCGTCGCCCTCAAGCTCGAACGCATCGCCAAGCGCTTCGCCCGCAACCACCAGGCCGAGCTCAGCTACGAC CAGGCGTTGGTCAAGGCCATCGCCGCGCGCTGCACCGAGGTCGACAGCGGTGCCCGCAACATCGACAACATCCTGTCCCA GACCCTGATGCCCGAGCTCGCCCAGCGCGTGCTCGAGCGCATGGCCCAGGACACGCCGATCCAGCGTCTTGCGATCGAGC TGGGCAGCGATGGCGATTTCGCCTATCGCGTGGCCTGA Protein sequence : MNLKSLFAKLNETSRTATESAAALCLSEHHYDVEVEHLLLQLLDNSDSDLAPILRHYEVVAERLQAQLVTALGTFKKGNT RTPALSPHITRMIEQAWLLASIEYGVGQVRSAHLLQALLDDAELRRVVIASAPELEKINADDLRLNLAALVEGSAESRQA SPLASPAAPVNSASKAGGKTPALDQYTVNLTQSAREGRIDPVLGREFEVRQMVDILTRRRQNNPILTGEAGVGKTAVVEG LALRIAQGDVPAVLKDVALHTLDLGLLQAGAGVKGEFENRLKAVIEEVKRSLHPIILFIDEAHTLIGSGGQAGQNDAANL LKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKVEEPDEDKAIHMLRGLLGKMREHHKVAVMDEALVQAVRLSN RYITGRQLPDKAVSVLDTACARIALAQSSQPGALEDCRRQIDNLQAEIAVLGHEAGKGHDHTRRLGELQAALQAEQQREQ QLNTQWQQELELVEQLKALDAASEADAKQLNALRAELARVQGDQPLVHALVDSGAIAQVISGWTGIPLGKMLRDEIDTVQ RLPALLGERVLGQDHALHEIGKRIKISRARMEDPNKPIGVFLLLGPSGVGKTETALALADTLYGGERNLITINMSEYQEA HTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLDDGEGREINFRNTVIILTSNT GTERIMQTCLNATELPTPAAIVEDLRDQLNHVFKPAFLGRLSIVPFYPVQDQILERIVALKLERIAKRFARNHQAELSYD QALVKAIAARCTEVDSGARNIDNILSQTLMPELAQRVLERMAQDTPIQRLAIELGSDGDFAYRVA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 5e-167 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| B479_14115 | YP_007229660.1 | type VI secretion ATPase | VFG2084 | Protein | 6e-149 | 46 |
| B479_14115 | YP_007229660.1 | type VI secretion ATPase | VFG0079 | Protein | 1e-106 | 41 |
