Gene Information

Name : B479_15280 (B479_15280)
Accession : YP_007229893.1
Strain : Pseudomonas putida PC9
Genome accession: NC_019905
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3385946 - 3386458 bp
Length : 513 bp
Strand : -
Note : COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

DNA sequence : 
ATGATCGACGCCGCGCCGCCACCGGAGCATAGCCTGCCTGCCCTGTACCGGGAACACCGCGGCTGGCTGGAAACCTGGCT
GCGGCGGCGCATGGGCAATGCCTGGGATGCCGCCGACCTCAGCCAGGATACCTTCCTGCGTATCCTGGCCAGCGCCCAGC
CGCTGGCAGACATTCGCGAACCGCGTGCCTACCTGCTGACCGTGGGCAAGCGCCTGCTGAGCAACTTCCACCAGCGGCGT
AGCCTGGAACAAGCCTACCTCGATGCACTGGCGCAGTTGCCCGAGCAGCATGTGCCCTCGCCAGAGCAGCGTTGGGTACT
GCTGGAAACCCTGCAAGCCCTCGACGAGTTGCTCGACGGCCTCAAGGTGCCGGTACGCAAGGCCTTTCTCTGGAGCCAGC
TGGAGGGCCTGGGCTATGCCGAGATCGGCAAGCGCCTGGGCGTTTGCGAGCGCTCGGTCAAACGCTACATGGCGCAGGCC
TACGAGCATTGCCTGCTGGCCGAACTGCAATGA

Protein sequence : 
MIDAAPPPEHSLPALYREHRGWLETWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLLTVGKRLLSNFHQRR
SLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKVPVRKAFLWSQLEGLGYAEIGKRLGVCERSVKRYMAQA
YEHCLLAELQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 1e-33 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B479_15280 YP_007229893.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 4e-34 50