Gene Information

Name : B479_02240 (B479_02240)
Accession : YP_007227307.1
Strain : Pseudomonas putida PC9
Genome accession: NC_019905
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 530017 - 530535 bp
Length : 519 bp
Strand : -
Note : COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

DNA sequence :

TTGTCTTCTGCACAGAGCCCACACGCCGATCTGGTCGGTGCGCTGTACCGCGACCATCGCGGCTGGCTGCTCGCCTGGCT
GCAACGCAGCATGGCCTGCCGCCAACGTGCCGAAGACCTGAGCCAGGACACCTTCGTGCGCCTGCTCGGCCGTGCGCAAC
TGGATACGCCCCGCGAACCCCGCGCGTTCCTGGCCGCCGTGGCCAAGGGCCTGATGTTCGACCACTTCCGCCGCGCCGCG
CTAGAACAAGCCTACCTGGCTGAACTGGCCCTGATGCCGGAAGCCGAACAACCTTCCCCGGAAGTGCAACACCTGATCCT
CGAGGACCTCAAGGCCATCGACCGCCTGCTAGGCAAGCTGTCGAGCAAGGCCCGCGCAGCATTCCTGCACAATCGCCTGG
ACGGTATGAGCCATGCCGAAATCGCCGAGCGCATGGGGGTTTCGGTTTCGCGGGTGCGCCAGTACATCGCCCAGGGCATG
CGCCAGTGCTACGTGGCCCTGTACGGGGAGCCGACGTGA

Protein sequence :

MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGRAQLDTPREPRAFLAAVAKGLMFDHFRRAA
LEQAYLAELALMPEAEQPSPEVQHLILEDLKAIDRLLGKLSSKARAAFLHNRLDGMSHAEIAERMGVSVSRVRQYIAQGM
RQCYVALYGEPT

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	5e-29	46

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
B479_02240	YP_007227307.1	RNA polymerase sigma factor	VFG1049	Protein	2e-29	46