Gene Information

Name : B479_03180 (B479_03180)
Accession : YP_007227495.1
Strain : Pseudomonas putida PC9
Genome accession: NC_019905
Putative virulence/resistance : Virulence
Product : peptide ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 724104 - 724790 bp
Length : 687 bp
Strand : -
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGATCCGCCTGCGCGGCGGTAGCCGCAGCTTCCAGTTGGGCGAGCAGCAGGTGATGGGGCTGGATGGCCTGGACCTGGA
CATCGCCGCCGGTGACTACATGGCGGTGATGGGCCCGTCAGGCTCGGGCAAGTCGACCCTGCTGAACATCCTCGGCCTGC
TCGACGCGCCGAGCGCCGGCGAATACTGGCTGCAGGGCGAGGCCACGGCGTCGCTGAGCGAGGCGCGCCGCGCCCAGTTG
CGCAGCCGACTGATAGGTTTCGTGTTCCAGTCCTACCACCTGATCGCACGGCTGACGGTGCTGGAAAACATCGAGCTGCC
GATGGTCCTCGCCGGCATTGGTGCGGCACAACGGCGCAAGCGCAGCAGCCAATTGGTGGCACGCCTGGGGCTGGGCGAGC
GCATTGCCCACCGCCCGGCCGAGCTGTCCGGTGGCCAGCGCCAGCGCGTCGCGATCGCCCGGGCGATGGTCATGCAACCG
GCGCTGCTGTTGGCCGACGAACCCACCGGCAATCTCGATAGCCAGGCCGGCGCAGAGGTCTTCAGCCTGCTGGAGGAGCT
CAACGGCGAGGGCCTGACCCTGATAGTGGTGACCCACGATGCCAGCCTGGGCGCCCGTGCACAGCGCCAGCTGCACATGC
GTGACGGGCGGATCCACAGTATTGCGCCGCAGTGGGCGCGGGCCTGA

Protein sequence : 
MIRLRGGSRSFQLGEQQVMGLDGLDLDIAAGDYMAVMGPSGSGKSTLLNILGLLDAPSAGEYWLQGEATASLSEARRAQL
RSRLIGFVFQSYHLIARLTVLENIELPMVLAGIGAAQRRKRSSQLVARLGLGERIAHRPAELSGGQRQRVAIARAMVMQP
ALLLADEPTGNLDSQAGAEVFSLLEELNGEGLTLIVVTHDASLGARAQRQLHMRDGRIHSIAPQWARA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B479_03180 YP_007227495.1 peptide ABC transporter ATPase NC_008702.1.4606598. Protein 2e-45 61
B479_03180 YP_007227495.1 peptide ABC transporter ATPase NC_012469.1.7686878. Protein 6e-47 47
B479_03180 YP_007227495.1 peptide ABC transporter ATPase CP001581.1.gene798.p Protein 2e-30 41
B479_03180 YP_007227495.1 peptide ABC transporter ATPase CP001581.1.gene598.p Protein 6e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B479_03180 YP_007227495.1 peptide ABC transporter ATPase VFG2059 Protein 2e-14 43