|
Name : B488_08440 (B488_08440) Accession : YP_007233091.1 Strain : Liberibacter crescens BT-1 Genome accession: NC_019907 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 925123 - 929268 bp Length : 4146 bp Strand : - Note : - DNA sequence : ATGGCTCAGAGCTTTTCTTTCAGTGGTCGTAAGCGCATACGTAAGTTTTTTGGGAAAATTCCTGAAGTTGTCGATATGCC AAATCTTATTGAGGTGCAGAAGGCATCTTATAATCAGTTTCTTATGATCGAAGAGCCTCCCGATGGGCGTCCCAATGAAG GCTTGCAGTCTGTATTTAAGTCTGTTTTTCCTATTGTGGATTTTTCAGGTGTTGCGATGCTCGAATTCGTTTCTTACGAG TTTGATCCTCCAAAATTTGATGTTGATGAATGTCGTCAACGTGATTTGACTTATTCAGCTCCTCTTAAAGTAATTTTGCG CCTTATAGTGTTTGATATAGATGAGGATACTGGAGCAAAGTCTATTAAGGACATAAAGGAACAAAGTGTTTATATGGGTG ACATGCCGCTTATGACGGAAAATGGTACCTTTATAATTAACGGAACACAGCGTGTAATTGTATCCCAGATGCATCGTTCT CCTGGGGTTTTCTTTGATCATGACAAGGGTAAGTCAAGTCCTTCAGGAAAGCTGTTGTTTGCTTGTCGTATTATTCCTGC TCGTGGATCTTGGCTTGATATTGAGTTTGATTCTAAAGATATAATCTGTGTTCGAATAGATCGTCGTCGTAAGATTCATG TTACATCATTTTTGATGTGTTTAGGCATGGATGCTGAAGAGATTCTTTCAACTTTTTATTCTAAGCTTATATATTCTAGA GATGGTAATGATTGGCGTGTTCCTTTTGAGCCCAATTTATTGTTTGGTTCTAAGGCTTTTTCAGATTTGGTTGATGCAGA TACAGGTGAAGTTGTAGCAGAAGCTGGAAAAAAATTAACTGCGAGGTTTTTGAATCAGATTAAAGATAAAGGTGTAAAAT TTCTTAAAGCCACTGATAGTGACTTATATGGTTCTTATATTGCAGAGGATATTGTAAACTTTAAGACAGGAGAGATTTAT CTTGAAGCAGGTGATGAAATCAATGAGAAAAATTTAGAAATTATAAAAGAAGCAGGTTTTACTGAAATTCCAGTTTTGTA TGTTGATTATGTTAATGTTAGTCCTTACATCCGCAATACTTTAGCTGTAGATAAAAATGAAAGTCATCAAGAAGCATTAT TTGATGTTTATCGTGTAATGAGGCCTGGCGATATTCCTACAATTGCTGCTGCTGAAGCTATGTTCAATTCTTTATTCTTT GATTCGGAGAGGTATGATCTTTCAGCCGTGGGTCGAGTAAAGATGAATATGCGTCTTAATCTTGATGTTCCTGATACTTT GAGAACTATACGAAAAGAAGATATAATTGCTATTATTAAGCTTTTAGTTGATTTGCGTGGAGGTAAAGGTGAAATTGATG ATATTGATAATCTTGGTAATCGACGTGTGAGATCTGTCGGTGAATTGATGGAAAATCAATATCGTGTTGGTTTATTGCGT ATGGAACGTGCAATAAAGGAACGTATATCTTCAATTGAAATTGACACAGTAATGCCTCAGGATATTATTAATGCTAAACC TGTTGCTTCTGTTGTTCGTGAGTTTTTTGGTTCTTCACAGTTGTCTCAATTTATGGATCAGGTAAATCCTTTGTCTCAGA TAACGCATACTCGTCGTTTATCAGCTCTTGGTCAAGGAGGTTTAACAAGAGAGCGTGCTGGTTTTGAGGTTCGTGATGTG CATCCAACTCAATATGGTCGTATATGTCCTATTGAAACTCCAGAAGGTCCAAATATAGGGTTAATTAATTCTCTTGCTAC TTTTGCTCGTGTTAATAAGTATGGTTTTATAGAATCTCCTTATCGTAAAATTGAAAATAGAAAAGTAACAGATAATGTTG TTTATTTATCAGCAACAGAAGAGGAAAAGTATTATATAGCACAGGCGAATGCTCCTCTTGAAGAAGATGGATTTTTTTCA GAAGAATTTGTTGTTTGTCGTCATTCTGGAGAAGTCATGCTTGTTCCGCGTGATAATATAGATCTTATGGATGTTTCTCC AAAGCAGTTGGTTTCAGTTGCTGCTGCTCTTATTCCTTTTCTAGAAAATGATGATTCTAATCGTGCGCTTATGGGATCTA ATATGCAGCGTCAGGCTGTTCCATTGCTGCAAGCTGAGGCTCCTTTTGTCGGTACTGGTATGGAGTCTGTTGTTGCCAGG GATTCTGGTGCTGCAATCGTTGCGAAGCGCGCTGGAATTGTTGATCAGGTTGATGCAACTCGTATTGTTATACGTGCTAC AGAAGATGTTGATCCTTCAACTTCTGGTGTTGATATTTATCGTTTAATGAAGTTTCAACGTTCTAATCAAAATACCTGTA TTAATCAACGTCCATTAGTAAATGTTGGTGATGAAGTTACTCGAGGTGACATTATAGCGGATGGTCCCTCTACGGATTTA GGAGATTTGGCTCTTGGCCGTAATGTAGTCGTAGCATTTATGCCGTGGAATGGCTATAATTATGAAGATTCTATCTTGTT ATCAGAAAGAATGGTTTCAGACGATGTTTTTACTTCTATTCATATGGAAGAATTTGAAGTAATGGCTCGTGATACTAAGC TTGGTCCAGAAGAGATAACACGTGATATACCGAATGTTTCAGAGGAAGCATTAGGAAGTCTCGATGAATCTGGTGTTGTT TATATAGGCGCTGAGGTTAAGCCTGGTGATATTTTGATTGGAAAGATTACTCCTAAGGGTGAGAGTCCGATGACACCTGA AGAGAAGCTCTTGCGAGCTATTTTTGGTGAGAAAGCTTCTGACGTTCGTGATACTTCTATGCGTATGCCACCTGGCGCTT ATGGTACTGTTATTGAGGTGCGTGTATTTAATCGTCATGGAGTTGAAAAAGGTGAACGTTCTATAGCTATTGAGCGGGAA CAAATTGAACGTCTTGCTAAAGATCGTGATGATGAGCAAGCAATCTTGGATCGTAATGTTTATGGACGTTTAATGGGAAT GCTTTCAGGGCAGATTGCAATTACTGGTCCAAGAGATTTTAAAAAAGGATCTAAACTTTCCAATACGTTAGTGTTACAAT ATCCTCGCTCGCAATGGTGGATGTTTGCTGTTAAGGACGAGAAAGTTCAAGAAAAAATTGAAGCTTTGCAAGCTCAGTAT AACAAGTCTAAATCTCATCTTGAACGTCGATTTATGGATAAGGTTGAGAAGCTTCAGTGGGGTGATGAAATGCCTCCAGG TGTCATGAAGATTGTAAAAGTTTTTGTGGCTGTGAAGCGTAAAATTCAACCTGGTGACAAAGTGGCTGGGCGTCATGGCA ACAAAGGTGTTGTTTCTTGTATAGTTCCTTGTGAAGACATGCCATTTCTTGAGGATGGTACCCCTGTAGATATTGTTTTG AATCCTTTGGGTGTTCCATCTCGTATGAATGTTGGTCAAATTCTTGAGACTCATCTTGGTTGGGCTTGTGTTGGTATTGG TAAACAGATTAGTCAACTCATAGAAGCTTATAGAGCCTATCAAAATATAGATCCTCTTCGTAAATTTCTTGAAAATGTTA TTGGTAATGGTCCTAATAGGGATTCAATTGTTGATTTTGATGATGCTTCAATATTGTGCTTATCAAATCAATGGAAGTCA GGTATTTCTATTGCAACACCTGTTTTTGATGGAGCAAGCGAGAAGGATATAAATGCTATGCTTCAGATGGCAGGTCTGAA TGAAAGCGGTCAATCTATACTTTATGATGGTCGGACGGGAGAGCAATTTGATCGTCCAGTGACAGTTGGTTATATTTATA TGTTGAAGCTGAATCATTTGGTTGATGATAAAATTCATGCTCGTTCTATAGGTCCTTATTCTCTTGTGACACAGCAACCG TTGGGAGGTAAGGCTCAATTTGGTGGACAAAGGGTTGGAGAAATGGAAGTATGGGCTCTTGAAGCTTATGGTGCAGCTTA TACTCTTCAAGAGATGTTGACAGTTAAATCTGATGATGTTGCTGGTCGTACAAAGGTTTATGAGGCTATTGTAAGAGGAG ATGATACTTTTGAAGCTGGTATTCCAGAGAGTTTTAATGTTCTCGTTAAGGAAATGCATGCCCTGGGTCTTAGTGTTGAT CTAGAAAATTCGAATATAGATAATAATACAAAAAAAGATGAAGTTTCTGATTTAACAAAATTTTAG Protein sequence : MAQSFSFSGRKRIRKFFGKIPEVVDMPNLIEVQKASYNQFLMIEEPPDGRPNEGLQSVFKSVFPIVDFSGVAMLEFVSYE FDPPKFDVDECRQRDLTYSAPLKVILRLIVFDIDEDTGAKSIKDIKEQSVYMGDMPLMTENGTFIINGTQRVIVSQMHRS PGVFFDHDKGKSSPSGKLLFACRIIPARGSWLDIEFDSKDIICVRIDRRRKIHVTSFLMCLGMDAEEILSTFYSKLIYSR DGNDWRVPFEPNLLFGSKAFSDLVDADTGEVVAEAGKKLTARFLNQIKDKGVKFLKATDSDLYGSYIAEDIVNFKTGEIY LEAGDEINEKNLEIIKEAGFTEIPVLYVDYVNVSPYIRNTLAVDKNESHQEALFDVYRVMRPGDIPTIAAAEAMFNSLFF DSERYDLSAVGRVKMNMRLNLDVPDTLRTIRKEDIIAIIKLLVDLRGGKGEIDDIDNLGNRRVRSVGELMENQYRVGLLR MERAIKERISSIEIDTVMPQDIINAKPVASVVREFFGSSQLSQFMDQVNPLSQITHTRRLSALGQGGLTRERAGFEVRDV HPTQYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIENRKVTDNVVYLSATEEEKYYIAQANAPLEEDGFFS EEFVVCRHSGEVMLVPRDNIDLMDVSPKQLVSVAAALIPFLENDDSNRALMGSNMQRQAVPLLQAEAPFVGTGMESVVAR DSGAAIVAKRAGIVDQVDATRIVIRATEDVDPSTSGVDIYRLMKFQRSNQNTCINQRPLVNVGDEVTRGDIIADGPSTDL GDLALGRNVVVAFMPWNGYNYEDSILLSERMVSDDVFTSIHMEEFEVMARDTKLGPEEITRDIPNVSEEALGSLDESGVV YIGAEVKPGDILIGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGAYGTVIEVRVFNRHGVEKGERSIAIERE QIERLAKDRDDEQAILDRNVYGRLMGMLSGQIAITGPRDFKKGSKLSNTLVLQYPRSQWWMFAVKDEKVQEKIEALQAQY NKSKSHLERRFMDKVEKLQWGDEMPPGVMKIVKVFVAVKRKIQPGDKVAGRHGNKGVVSCIVPCEDMPFLEDGTPVDIVL NPLGVPSRMNVGQILETHLGWACVGIGKQISQLIEAYRAYQNIDPLRKFLENVIGNGPNRDSIVDFDDASILCLSNQWKS GISIATPVFDGASEKDINAMLQMAGLNESGQSILYDGRTGEQFDRPVTVGYIYMLKLNHLVDDKIHARSIGPYSLVTQQP LGGKAQFGGQRVGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMHALGLSVD LENSNIDNNTKKDEVSDLTKF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 57 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| B488_08440 | YP_007233091.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 59 |
| B488_08440 | YP_007233091.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 58 |
| B488_08440 | YP_007233091.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 58 |
| B488_08440 | YP_007233091.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 58 |
| B488_08440 | YP_007233091.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 58 |
| B488_08440 | YP_007233091.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 58 |
| B488_08440 | YP_007233091.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 57 |
| B488_08440 | YP_007233091.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 57 |
| B488_08440 | YP_007233091.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 57 |
| B488_08440 | YP_007233091.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 57 |
| B488_08440 | YP_007233091.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 57 |
| B488_08440 | YP_007233091.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 57 |
| B488_08440 | YP_007233091.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 57 |
| B488_08440 | YP_007233091.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 57 |
| B488_08440 | YP_007233091.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 56 |
| B488_08440 | YP_007233091.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 56 |
| B488_08440 | YP_007233091.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 55 |
