Gene Information

Name : clpC (TepiRe1_2348)
Accession : YP_007273159.1
Strain : Tepidanaerobacter acetatoxydans Re1
Genome accession: NC_019954
Putative virulence/resistance : Virulence
Product : class III stress response-related ATPase, AAA+ superfamily
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2278946 - 2281387 bp
Length : 2442 bp
Strand : -
Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12354604, 15529410, 16525504; Product type f : factor

DNA sequence :
ATGAACGGAAGATTTACTGAACGAGCTCAAAAAGTAATTGCCTATGCACAGGAAGAAGCTAGACGTCTTAATCATAACGT
AGTGGGCACTGAGCATTTACTTTTGGGTCTGTTAAGAGAAGGTGAAGGAGTTGCTGCCAGGGCTTTGATTAATCTTGGTG
TAGATGCAGATAAAGTAAGAAGTCAGGTAGAGATGATGATAGGAGTAGGGCCCTTTCCGATACAGGGACCTATCGGTTAT
ACACCCAGAGCAAAGAGAGTAATGGAGCTTGCTATAGATGAATCCAGGAGATTAGGTCATAACTATGTAGGTACTGAACA
TATCTTACTTGGTCTTATTCGAGAAGGTGAAGGAGTTGCGGCACAGGTATTGGCTAATTTGGGCGTAAGCTTGGATAAAG
CTCGTGAAGAAGTTTTGAACCTGTTAGTGGATTCAAAGGCCCAAGGAAGTTATAAGAAATCAGCCAATACTCCAACACTC
AATCAGTTTGGCAGAGACCTTACAGAACTGGCTGCTGAGGGTAAGCTTGATCCGGTGGTGGGACGCGAGAAGGAAATCGA
ACGGGTGATACAAGTTCTTACCCGCCGCACTAAGAACAACCCCTGTCTTATAGGCGAGCCGGGTGTAGGAAAAACTGCTG
TGGTGGAAGGGCTTGCACAACAGATTATCGAACAAAATGTACCTGAGATTTTAAAGGATAAAAGAGTAGTAAGTCTTGAT
ATGGCATCATTGGTTGCCGGAACTAAATTTCGCGGTGAGTTTGAAGAGCGCCTCAAAAAAGTAATGACAGAAATAAAGCA
AGCGGGGAATGTCATACTTTTTATTGATGAGATGCATACGATTATAGGGGCCGGTGCTGCCGAAGGAGCTATCGATGCTT
CAAATATACTCAAACCGGCTCTGGCTCGAGGCGAAATTCAAACAATTGGCGCCACAACTATCGACGAATATAGAAAATAT
GTGGAGAAGGACCCGGCACTGGAGCGTCGTTTTCAACCCATTATGGTGGAGGAACCGACAGTGGAAGAAACCATACAGAT
ACTAAAAGGCTTGAGAGATAGATATGAGGCACATCATCGTGTTAAAATCTCCGATGAAGCGATTGAAGCTGCTGCAAAAC
TTTCTTACAGATATATTACCGACAGGTTTTTACCTGACAAAGCCATTGACTTGATTGACGAGGCAGCTTCTCGAGTGCGC
TTAAAGACACTTACGGCTCCACCTGAGCTTCGCGAGATGGAAGATAAACTAGAAGCTATCCGAAAGGAAAAAGATGCGGC
CATAAGAGCACAAGAGTTTGAAAAAGCAGCAAGCCTTAGAGATAAGGAACAAGAAGTCAAGGCAGAGGTGGAAAAATTAA
AAGAGTTATGGCAAAAAGACTATAAATTTGAGAACTCTACTGTAAAAGAGGAAGATATTGCACATATTGTTGCAATTTGG
ACGGGAATACCTGTTAAACGCTTAACGGAAGAAGAGTCAGAGCGTCTGCTGAAATTGGAAGAAGTTTTGCATAATAGAGT
CATAGGTCAGGACGAAGCTGTAAAGGCTGTTGCAAAAGCTATACGGAGGGCTTATGCCGGCCTTAAAGACCCTGCAAGAC
CTATAGGTTCGTTTATATTCTTAGGACCTACGGGAGTAGGCAAGACAGAATTGGCAAGGGCTTTAGCCGATGCAATGTTT
GGCGATGAAGATGCCATGATCAGGCTGGATATGTCTGAATACATGGAGAAATTTGCTGTATCTCGAATTGTCGGCGCTCC
TCCGGGATATGTGGGATATGAAGAGGGCGGCGAACTAACTGAAAAAGTTCGGCGCAGACCTTATTCGGTTATACTTTTTG
ACGAAATAGAAAAGGCTCATCCGGATGTTTTCAACATTCTTTTGCAAATTCTTGAGGACGGCAGGTTAACTGACGCAAAA
GGTCGAACTGTAGATTTTAGAAATACTATACTCATCATGACTTCTAATGTTGGTGCAAATCTTATACAAAAACCGAAGGT
ATTAGGTTTTGCTCCGGTGCAGGAAGAAGAAAAGAGCTATGCTGAAATGAAGGATATGGTTTTAAATGAACTTAAGAGAA
CATTTAAGCCTGAATTTCTAAACCGCATAGATGAGATTATAGTTTTCCATCCTCTCAGTGAGGAACATATTCGAGAAATA
GTTACTCTTATGATTGATGAGGTTAACAGAAGACTTACCGAAAAGCAAATTTCCATTGAGGTTACTGACAAGGCTAAAGA
TGTGTTGGCCAAAGAGGGTTATGATCCCATGTATGGCGCAAGGCCGCTTCGCCGTGTAATTCAAAAGAGAATTGAAGACA
GACTTTCTGAAGAAATGTTAAAAGGCAGTATTACAGATGGTGATGTGGTATTAGTTGATGTTGACGAGGATGAGAAAGAG
TTCACATTTAAGAAAAAAGAGCTTACAACAACTAAATTTTAA

Protein sequence :
MNGRFTERAQKVIAYAQEEARRLNHNVVGTEHLLLGLLREGEGVAARALINLGVDADKVRSQVEMMIGVGPFPIQGPIGY
TPRAKRVMELAIDESRRLGHNYVGTEHILLGLIREGEGVAAQVLANLGVSLDKAREEVLNLLVDSKAQGSYKKSANTPTL
NQFGRDLTELAAEGKLDPVVGREKEIERVIQVLTRRTKNNPCLIGEPGVGKTAVVEGLAQQIIEQNVPEILKDKRVVSLD
MASLVAGTKFRGEFEERLKKVMTEIKQAGNVILFIDEMHTIIGAGAAEGAIDASNILKPALARGEIQTIGATTIDEYRKY
VEKDPALERRFQPIMVEEPTVEETIQILKGLRDRYEAHHRVKISDEAIEAAAKLSYRYITDRFLPDKAIDLIDEAASRVR
LKTLTAPPELREMEDKLEAIRKEKDAAIRAQEFEKAASLRDKEQEVKAEVEKLKELWQKDYKFENSTVKEEDIAHIVAIW
TGIPVKRLTEEESERLLKLEEVLHNRVIGQDEAVKAVAKAIRRAYAGLKDPARPIGSFIFLGPTGVGKTELARALADAMF
GDEDAMIRLDMSEYMEKFAVSRIVGAPPGYVGYEEGGELTEKVRRRPYSVILFDEIEKAHPDVFNILLQILEDGRLTDAK
GRTVDFRNTILIMTSNVGANLIQKPKVLGFAPVQEEEKSYAEMKDMVLNELKRTFKPEFLNRIDEIIVFHPLSEEHIREI
VTLMIDEVNRRLTEKQISIEVTDKAKDVLAKEGYDPMYGARPLRRVIQKRIEDRLSEEMLKGSITDGDVVLVDVDEDEKE
FTFKKKELTTTKF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 60
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 1e-83 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
clpC YP_007273159.1 class III stress response-related ATPase, AAA+ superfamily VFG0079 Protein 0.0 67
clpC YP_007273159.1 class III stress response-related ATPase, AAA+ superfamily VFG0080 Protein 7e-133 52