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Name : VPBB_2760 (VPBB_2760) Accession : YP_007276385.1 Strain : Genome accession: NC_019955 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta subunit Function : - COG functional category : - COG ID : - EC number : - Position : 3095807 - 3099835 bp Length : 4029 bp Strand : - Note : Equivalent to RIMD VP2922 DNA-directed RNA polymerase, beta subunit DNA sequence : ATGGTTTACTCTTATACCGAGAAAAAGCGCATCCGTAAGGACTTTGGTACTCGTCCACAAGTTTTGGACATTCCATACCT GCTATCGATCCAGCTCGATTCGTTCGACAAATTTATCGAACAGGATCCTGAAGGTCAATACGGTCTTGAAGCTGCTTTCC GTTCTGTATTCCCGATTCAGAGCTACAACGGCAATTCTGAGCTGCAATACGTTAGCTACCGTCTTGGTGAGCCAGTTTTT GACGTTAAAGAATGTCAAATCCGCGGTGTAACTTACTCAAAGCCACTACGTGTAAAACTACGCCTAGTTATCTTTGATAA AGACGCGCCAGCAGGTACTGTAAAAGACATTAAAGAACAAGAAGTCTACATGGGTGAAATTCCACTCATGACAGACAATG GTACCTTCGTAATTAACGGTACCGAGAGGGTTATCGTATCCCAGCTGCACCGAAGCCCAGGCGTGTTCTTCGACAGCGAT AAGGGTAAGACCCACTCTTCAGGTAAAGTTTTATACAACGCGCGCGTTATTCCTTACCGTGGTTCATGGCTTGATTTCGA GTTTGATCCTAAGGATAACTTGTACGTTCGTATCGACCGTCGTCGTAAGCTACCAGCATCGATCATCCTTCGTGCACTAG GTAAATCGACTGAAGAAATCCTAGATATCTTCTTCGAGAAAGTGAACTTCGAAGTGAAAGACCAAACTCTACTGATGGAG TTGGTTCCAGATCGTCTACGTGGTGAAACTGCGTCATTTGACATCGAATCGAATGGTAAAGTTTACGTAGAGCAAGGTCG TCGCGTAACAGCTCGTCATATCCGCCAACTAGAGAAAGATGGCGTTGATCACATCGAAGTACCAGTAGAGTACATCGTTG GTAAAGTTGCATCGAAAGATTACATCAACGAAGCAACAGGCGAGATCATTGTTAATGCTAACCAGGAAATCAGCCTGGAA GCACTAGCGAATCTATCTCAGGCTGGCCATAAAGCACTAGAAGTTCTGTTTACGAACGATCTAGACCACGGTCCATTCAT GTCAGAAACACTACGCATCGACAGCACAGTTGATCGTATTTCTGCATTGGTAGAAATCTACCGCATGATGCGCCCTGGTG AGCCACCAACAAAAGAAGCTGCAGAAGCACTATTCGAAAGCCTATTCTTCTCTGAAGAGCGTTACGATCTATCGACTGTT GGTCGTATGAAGTTTAACAGCTCTATCGGTCGTGAAGATGCTCAAGAGCAAGGCACACTTGATGAAACAGATATCATCGA AGTGATGAAGAAGCTTATCGCGATCCGTAACGGCAAAGGCGAAGTGGACGATATCGACCACCTAGGCAACCGTCGTATCC GTTCTGTCGGCGAAATGGCTGAGAACCAGTTCCGTGTAGGTCTAGTTCGTGTTGAGCGTGCAGTTAAAGAACGTCTAAGC CTAGGCGACCTTGACGCTGTTATGCCTCAAGACCTGATCAACGCGAAACCAATTTCTGCGGCAGTTAAAGAATTCTTTGG CTCTTCACAGCTTTCACAGTTCATGGACCAAAACAACCCGTTATCAGAAGTAACGCACAAGCGTCGTATTTCTGCATTGG GTCCTGGCGGTCTAACTCGTGAACGTGCTGGCTTCGAAGTTCGAGACGTACACGTAACTCACTACGGCCGTCTATGTCCT ATCGAAACGCCGGAAGGTCCAAACATCGGTCTGATCAACTCTCTATCTGCGTTTGCGCGTTGTAACGAGTACGGTTTCCT TGAGACGCCATACCGTCGCGTTGTAGATGGTGTTGTAACAGACGAAGTAGATTACCTATCTGCAATCGAAGAAGGCCAAT TCGTTATCGCTCAGGCGAACGCTAAGCTAAACGAAGATGGTACTTTTGCAGATGAGCTGATCACAGCTCGTCAGAAAGGT GAATCTGGTCTACACCCTCGTGAGCACGCTCAGTACATGGACGTTGCGACAAACCAGGTTGTATCTATCGCTGCATCGCT TATCCCGTTCCTAGAACACGATGATGCGAACCGTGCATTGATGGGTGCGAACATGCAACGTCAGGCAGTTCCAACACTGA AAGCTGACAAACCGCTTGTTGGTACTGGTATCGAACGTAACGTAGCCGTTGACTCAGGTGTAACTGCAGTTGCGAAACGT GGTGGTGTAATCCAGTCAGTAGATGCTTCTCGTATCGTTGTTAAAGTGAACGAAGAAGAGCTAGTACCAGGTGAAGCTGG TATCGACATCTACAACCTGACTAAATACACACGTTCTAACCAGAACACATGTATTAACCAGCGCCCATGTGTGATGCCAG GTGAACCTGTAGCACGCGGTGACGTTCTTGCTGATGGTCCTTCAACAGACCTTGGTGAGCTAGCGCTTGGCCAAAACATG CGTATCGCGTTCATGCCTTGGAACGGTTACAACTTCGAAGACTCGATCTTAGTATCTGAGCGCGTAGTTCAAGAAGACCG CTTCACGACAATCCACATTCAAGAACTGACTTGTGTGGCGCGTGACACTAAGCTGGGCTCTGAAGAGATCACAGCGGATA TTCCAAACGTAGGTGAATCTGCTCTGTCTAAACTAGACGAGTCAGGTATCGTTTACATTGGTGCTGAAGTTAAGGGTGGT GACATCCTAGTTGGTAAAGTAACACCTAAAGGTGAAACTCAGCTAATGCCTGAAGAGAAGCTACTACGTGCTATCTTTGG TGAAAAAGCATCGGATGTTAAAGATACTTCACTACGTGTACCGAACTCTGTATCCGGTACGATCATCGACGTTCAAGTCT TCACTCGCGATGGCGTAGAGAAAGACAAGCGTGCGCTTGAAATCGAACAGATGCAGCTTAAAGAAGCGAAGAAAGACCTA ACTGAAGAATTCCAGATTCTTGAGGGTGGCCTTCTAAACCGTGTTAAAGCTGTATTGATTGAAGGCGGTTACTCTGAAGC GAAACTAGACGCGACTGATCGTAAGAAGTGGCTAGAACTAACGCTAGAAGATGACGCACTACAAACTCAGCTTGAGCAAC TTGCTGAGCAGTGGGACGAGCTAAAAGCTGACTTCGATAAGAAGTTCGAAACTAAGCGTCGCAAGATCACTCAAGGTGAT GATCTAGCACCTGGCGTACTGAAGATCGTTAAGGTTTACCTAGCGGTTAAACGTCGCATTCAGCCTGGTGATAAGATGGC GGGTCGTCACGGTAACAAGGGTGTAATCTCTAAGATCAACCCTGTTGAAGACATGCCATACGATGAGAAAGGTCAGCCTG TAGACATCGTACTTAACCCACTGGGTGTACCTTCGCGTATGAACATCGGTCAGATCCTGGAAGTTCACTTAGGTCTGGCA GCGAAAGGTATCGGTGACAAGATCAACCAGATGGTTAAAGAGCAGCAAGAACTAGCGAAATTCCGCGAGTTCCTACAAAA AGTTTACGATCTAGGCGACACTCGCCAGAAAGTAGACATTGCTTCTCTATCTGATGATGAAGTACGTGCTCTGATCAAGA ACTTGCGTGGCGGTCTACCAATCGCGACACCTGTATTTGATGGTGCTCCAGAAGCATCAATCAAAGCACTTCTTGAGCTA GCAGACCTGCCAACATCTGGTCAGCTAACGCTGTTTGATGGTCGCACAGGTGATGCGTTTGAGCGTCCTGTAACTGTTGG TTACATGTACATGCTGAAACTGAACCACCTTGTTGATGACAAGATGCACGCACGTTCAACTGGTTCGTACAGCCTAGTAA CTCAGCAACCACTAGGTGGTAAAGCTCAGTTCGGTGGTCAGCGTTTCGGTGAGATGGAAGTATGGGCACTAGAAGCATAC GGTGCGGCTTACACTCTACAAGAAATGCTAACCGTTAAGTCAGATGACGTTAACGGCCGTACTAAGATGTACAAAAACAT CGTAGACGGTAACCACAGCATGGAACCTGGCATGCCAGAATCGTTCAACGTATTGTTGAAAGAGATCCGCTCGCTAGGTA TCAACATCGAGCTAGAAGACGAAGAGTAA Protein sequence : MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQDPEGQYGLEAAFRSVFPIQSYNGNSELQYVSYRLGEPVF DVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARVIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKSTEEILDIFFEKVNFEVKDQTLLME LVPDRLRGETASFDIESNGKVYVEQGRRVTARHIRQLEKDGVDHIEVPVEYIVGKVASKDYINEATGEIIVNANQEISLE ALANLSQAGHKALEVLFTNDLDHGPFMSETLRIDSTVDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTV GRMKFNSSIGREDAQEQGTLDETDIIEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDAVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHVTHYGRLCP IETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVDGVVTDEVDYLSAIEEGQFVIAQANAKLNEDGTFADELITARQKG ESGLHPREHAQYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAVDSGVTAVAKR GGVIQSVDASRIVVKVNEEELVPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVARGDVLADGPSTDLGELALGQNM RIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGG DILVGKVTPKGETQLMPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL TEEFQILEGGLLNRVKAVLIEGGYSEAKLDATDRKKWLELTLEDDALQTQLEQLAEQWDELKADFDKKFETKRRKITQGD DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLGLA AKGIGDKINQMVKEQQELAKFREFLQKVYDLGDTRQKVDIASLSDDEVRALIKNLRGGLPIATPVFDGAPEASIKALLEL ADLPTSGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 69 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| VPBB_2760 | YP_007276385.1 | DNA-directed RNA polymerase beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 85 |
| VPBB_2760 | YP_007276385.1 | DNA-directed RNA polymerase beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 85 |
| VPBB_2760 | YP_007276385.1 | DNA-directed RNA polymerase beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 85 |
| VPBB_2760 | YP_007276385.1 | DNA-directed RNA polymerase beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 85 |
| VPBB_2760 | YP_007276385.1 | DNA-directed RNA polymerase beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 85 |
| VPBB_2760 | YP_007276385.1 | DNA-directed RNA polymerase beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 84 |
| VPBB_2760 | YP_007276385.1 | DNA-directed RNA polymerase beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| VPBB_2760 | YP_007276385.1 | DNA-directed RNA polymerase beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 69 |
| VPBB_2760 | YP_007276385.1 | DNA-directed RNA polymerase beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 69 |
| VPBB_2760 | YP_007276385.1 | DNA-directed RNA polymerase beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 69 |
| VPBB_2760 | YP_007276385.1 | DNA-directed RNA polymerase beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 69 |
| VPBB_2760 | YP_007276385.1 | DNA-directed RNA polymerase beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 69 |
| VPBB_2760 | YP_007276385.1 | DNA-directed RNA polymerase beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 69 |
| VPBB_2760 | YP_007276385.1 | DNA-directed RNA polymerase beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| VPBB_2760 | YP_007276385.1 | DNA-directed RNA polymerase beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 64 |
| VPBB_2760 | YP_007276385.1 | DNA-directed RNA polymerase beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 64 |
| VPBB_2760 | YP_007276385.1 | DNA-directed RNA polymerase beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 62 |
