Gene Information

Name : VPBB_A0934 (VPBB_A0934)
Accession : YP_007300963.1
Strain :
Genome accession: NC_019971
Putative virulence/resistance : Virulence
Product : ClpA/B-type chaperone
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1051228 - 1053795 bp
Length : 2568 bp
Strand : -
Note : Equivalent to RIMD VPA1028

DNA sequence :
ATGGCTTCATTATCACTTTCAGCGTTGGTCGAAAGATTGTCTCCGCAAGCGAAGGAAACGCTAGAGCAAGCGGCTGCAAT
GGCAAGTTCGCGTACACATCATAGTATAGAGTTGACCCACTGGTTGTTGACGATAGTTCAACATCCATCCGGTATTTATT
CAGAAGTGTTTGAAGCTTTTGATATTGATGAAAGAAAAGTCGAAGAACAACTGCAAGCTCAGCTTGAAAAATACAAAACG
GGATGCCAAACCGTCCCAGGCCTTTCTGCTCATACTGTAACCATGATGCAGAATGCTTTGATGTGCGCAACGATAGAGTT
TCATGAAGAACAAGTGAACTGTATCCACTTACTGTTTGCGTATCTTTCTGATGACACGCTAGTGAATATGATGAACGCTA
TTAGCGCGGAGCTAGACAAAGTCGAACCATCTCGCCTAGTCGCAATGAAAGAGCATGTGGGCGATGGTGGAAACAATACT
TCTAAGGCGACGAGTAGCTCGAACTCAGCATTGAATCAGTTCACAACGGATCTTACTGAGCAAGCTAAAGCTGGAAAAAT
AGATCCTGTTATCGGTCGCGACAATGAAATCCGCTTGATGATCGATATTTTATTACGTCGTCGCCAAAACAATCCGATCT
TAACGGGTGAGGCAGGCGTAGGTAAAACTGCGGTAATTGAGGGGCTGGCGCAAAAAATAGTGGATGGGGATGTTCCTCCG
GCTTTACATGATGTTGCCATCAAATCACTCGATCTTGCTTTGCTTCAGGCGGGGGCGGGGATGAAAGGGGAGTTTGAAAA
TAGACTTAAAAATCTCATTCGAGAAGTGAACGAATCTTCGCAGCCAATCATTCTTTTTATCGATGAAGCTCATGGTCTAA
TCGGAGGTGGTGGTCAAGCGGGACAAGGTGATGCTGCTAATATATTGAAACCAGCGTTGGCCCGAGGAGAGTTACGGACC
ATCGCTGCAACTACTTGGGCTGAGTACAAAAAATATTTTGAAAAAGATGCCGCGTTAACGAGGCGCTTCCAGGTTGTGAA
AGTTGACGAGCCGACTCCTGAGTTAGCGGTAGATATGCTTAGAGGCTTGGTTAACATCATGGGGCAACATCATGATGTCT
ATATCACAAGCCAAGCACTGAATGCTGCGGTACAACTTTCTGCTCGCTACATTAACGGACGCCAACTGCCAGATAAAGCA
GTATCGGTATTAGATACAGCATGTTCGCGTGTTGCATTGAGCCAATCTGCCACGCCGGGCGCGTTGGATAGCAAAAAGAA
AAAGCTAAACATCAAAGAAGCTGAGTTTCAACAACTTACCAAAGAGGCTCAATTGGGCGTAAGTCACGATGAACTGCTTA
ATAATATTCGGTATGAGATCGATGAGTTATCTAATCAAGTCATAGAATTAGAGGCAATTTGGGAACAAGAAAAGCAGTGG
GTTCAAGAAGCTAAGTCGTTGAGAGCTAGGGTGATAGAAGAGAATGCCGACTGTGACAAAGAGCGATTACAGGAAATCGA
ATCGAACTTAGCTCTCAACGCCCAACCTTTAGTCTTTTCTCATGTGAATGAATCTTTGATTGCTGAGGTGATTTCTGATT
GGACAGGCATTCCACTTGGAAAATTGCAAGATGACGAAATTGAAGCGGTTCTTAACCTAAAAGATAGCTTGTGCGAGCGA
GTGGTGGGGCAAGATCATGCTCTAGAAATCATGTCCGAAGTGATCAAAACAGCAAGTGCCCAATTGACGGATGAAACCAA
ACCTAATGGCGTGTTTTTATTAACTGGCCCTAGTGGTGTCGGAAAAACGGAATCCGCTCTTGCTATCGCAGAGAAAGTTT
ATGGGAGCGAAGACAACGTAACCACGATAAATATGTCGGAATTCAAAGAAGAGCATAAGGTTTCATTGTTGTTAGGCTCT
CCTCCTGGATATGTCGGATACGGTGAGGGGGGCGTTCTAACGGAAGCCGTAAGGCGTAAACCTTACAGTGTGATTCTGTT
GGATGAAATGGAAAAAGCGCACCCCGGTGTGCAAGATATTTTCTATCAAGTGTTTGATAAAGGCTCCATTAAAGATGGTG
AAGGTCGAGATATCGATTTTAAAAACACCATCATTATCATGACGGCGAATACCGGCACAGAAACCACAATGTCTCTCTAT
GCAGATCCAGACTTAGCGCCAGAACCGGAAGCTTTAAAAGAAGCGCTTAGAGATGACTTGCTAACAGATTTTAAACCTGC
ATTTTTGGGGCGGGTTAATGTATTACCTTACTTGCCTCTCGGAAAAGAAGTCCTAACGGAAATAACTAAGTTAAAACTCA
ACAAAGTATCTAACCGTATCCGAAAACATTATTCGGCAGGGTTATATTTTGATGAACAACTAATTAATGACATTGTAGAC
AATAGTAATGAGTCAGGAAGTGGTGCTCGTGTAGTTCAAACCACCATTGAAAATAATTTACTTCCTAAAATTTCTCATGA
AATATTGAATGCAATTCTTAATGGTAAGACGTTCGATGAAATTAATGTTAGAGGTTCAATTAAAGAACTAGAAGTCTCAC
TTATTTAA

Protein sequence :
MASLSLSALVERLSPQAKETLEQAAAMASSRTHHSIELTHWLLTIVQHPSGIYSEVFEAFDIDERKVEEQLQAQLEKYKT
GCQTVPGLSAHTVTMMQNALMCATIEFHEEQVNCIHLLFAYLSDDTLVNMMNAISAELDKVEPSRLVAMKEHVGDGGNNT
SKATSSSNSALNQFTTDLTEQAKAGKIDPVIGRDNEIRLMIDILLRRRQNNPILTGEAGVGKTAVIEGLAQKIVDGDVPP
ALHDVAIKSLDLALLQAGAGMKGEFENRLKNLIREVNESSQPIILFIDEAHGLIGGGGQAGQGDAANILKPALARGELRT
IAATTWAEYKKYFEKDAALTRRFQVVKVDEPTPELAVDMLRGLVNIMGQHHDVYITSQALNAAVQLSARYINGRQLPDKA
VSVLDTACSRVALSQSATPGALDSKKKKLNIKEAEFQQLTKEAQLGVSHDELLNNIRYEIDELSNQVIELEAIWEQEKQW
VQEAKSLRARVIEENADCDKERLQEIESNLALNAQPLVFSHVNESLIAEVISDWTGIPLGKLQDDEIEAVLNLKDSLCER
VVGQDHALEIMSEVIKTASAQLTDETKPNGVFLLTGPSGVGKTESALAIAEKVYGSEDNVTTINMSEFKEEHKVSLLLGS
PPGYVGYGEGGVLTEAVRRKPYSVILLDEMEKAHPGVQDIFYQVFDKGSIKDGEGRDIDFKNTIIIMTANTGTETTMSLY
ADPDLAPEPEALKEALRDDLLTDFKPAFLGRVNVLPYLPLGKEVLTEITKLKLNKVSNRIRKHYSAGLYFDEQLINDIVD
NSNESGSGARVVQTTIENNLLPKISHEILNAILNGKTFDEINVRGSIKELEVSLI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 9e-151 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VPBB_A0934 YP_007300963.1 ClpA/B-type chaperone VFG2076 Protein 1e-169 47
VPBB_A0934 YP_007300963.1 ClpA/B-type chaperone VFG2084 Protein 1e-139 44