|
Name : Mesau_04256 (Mesau_04256) Accession : YP_007305975.1 Strain : Mesorhizobium australicum WSM2073 Genome accession: NC_019973 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase, beta subunit Function : - COG functional category : - COG ID : - EC number : - Position : 4321916 - 4326052 bp Length : 4137 bp Strand : - Note : PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subuni DNA sequence : ATGGCCCAGACCCAGACTTTCAATGGCCGCAGACGCGTACGCAAGTTCTTCGGGAAGATCCCGGAAGTTGCGGAGATGCC GAACCTTATCGAGGTTCAGAAGGCATCCTATGACCAGTTCCTGATGGTGGACGAGCCCAAGGGCGGGCGTCCCGACGAAG GACTGCAGGCTGTTTTCAAGTCGGTCTTCCCGATCTCCGATTTTTCCGGCTCCTCCATGCTGGAGTTCGTGAAGTACGAG TTCGAAGGACCGAAATTCGACGTTGACGAATGCCGTCAGCGCGACCTGACCTATGCCGCGCCGCTGAAGGTGACGCTGCG CCTCATCGTGTTCGATATCGACGAGGATACCGGTGCCAAGTCGATCAAGGACATCAAGGAGCAGGACGTCTACATGGGCG ACATGCCGCTCATGACCTTGAACGGCACCTTTATCGTCAACGGCACCGAGCGCGTCATCGTCTCGCAGATGCACCGCTCG CCGGGCGTCTTCTTCGACCACGACAAGGGCAAGTCGCACTCGTCGGGCAAGCTTCTGTTTGCCGCCCGTGTGATCCCCTA TCGTGGCTCGTGGCTCGACATCGAGTTCGATTCCAAGGACGTCGTGCACGCCCGCATCGACCGTCGCCGCAAGATTCCGG TGACGTCGCTGCTGATGGCGCTTGGCATGGACGGCGAGGAGATCCTGTCGACCTTCTACAATAAGATCACCTACAAGCGC GCCGGCGACCATTGGCGCATTCCCTTCAACGTCGAGCGTTTCCGCGGCCTCAAGGCCGTCGGCGACCTGGTCGATGCCGA CACCGGCGAGATCGTCGTCGAGGCGGGCAAGAAGATCACCGCTCGCCAGGCACGCCAGCTCGGCGAAAAGGGTCTCAAGG CGATTAAGGCGACCGACGAGGATCTGCTCGGCAACTACCTGGCCGAGGACATCGTCAACTACGCCACCGGCGAAATTTTC CTCGAGGCCGGCGACGAGATCGACGACAAGACGCTCAAGGTGCTGCTCGGCACCGGCGAGCAGGAGATCCAGGTCCTCGA CATCGACCATGTCAATGTCGGCGCCTATATCCGCAACACGCTCGCCGTCGACAAGAACGAGAGCCGCCAGGACGCGCTGT TCGACATCTACCGTGTCATGCGCCCGGGCGAGCCGCCGACGCTCGAGACCGCCGAAGCCATGTTCAACTCGCTGTTCTTC GACAGCGAGCGCTACGACCTGTCCGCCGTCGGCCGCGTCAAGATGAACATGCGCCTCGAGCTCAAGGCCGAGGACACCGT GCGCGTGCTGCGCAAGGACGACATCCTGGCCGTGGTCAGGACGCTGGTCGAACTGCGTGACGGCAAGGGCGAGATCGACG ACATCGACAATCTCGGCAACCGCCGTGTGCGTTCGGTCGGCGAGCTGATGGAGAACCAGTACCGCGTCGGCCTGCTGCGC ATGGAGCGCGCGATCAAGGAACGCATGTCCTCGATCGAGATCGACACGGTCATGCCGCAGGACCTGATCAACGCCAAGCC GGCGGCCGCCGCCGTGCGCGAGTTCTTCGGTTCCTCACAGCTGTCGCAGTTCATGGACCAGACCAACCCGCTGTCGGAGA TCACCCACAAGCGTCGTCTCTCGGCGCTTGGGCCGGGCGGTCTGACCCGCGAGCGTGCCGGCTTCGAAGTGCGCGACGTG CACCCGACGCATTACGGCCGTATCTGCCCGATCGAGACGCCGGAAGGCCCGAATATCGGTCTGATCAACTCGCTGGCGAC CTTCGCGCGCGTCAACAAGTACGGCTTCATCGAAAGCCCGTACCGCAAGATCGTTGACGGCAAGCTGACCAATGACGTCG TCTATCTCTCGGCGATGGAAGAGGCCAAGCACCATGTCGCGCAGGCCAACGCCGAGCTCGACAAGAATGGCGGCTTCGTC GACGAGTTCGTCATTTGCCGCAGCGCCGGCGAAGTGATGATGGCGCCGCGCGAAAACGTCGACCTGATGGACGTGTCGCC CAAGCAGATGGTGTCTGTTGCCGCGGCGCTCATCCCGTTCCTCGAGAACGACGACGCCAACCGCGCTCTGATGGGCTCGA ACATGCAGCGCCAGGCCGTGCCGCTGGTGCGCGCCGAGGCGCCGTTCGTCGGCACCGGCATGGAGCCGATCGTCGCCCGT GACTCGGGCGCCGCCATCGGCGCGCGTCGTGGCGGCATCGTCGACCAGGTGGACGCGACGCGTATCGTTATCCGCGCCAC CGAGGATCTCGATCCGGGCAAGTCCGGCGTCGACATCTACCGGCTGATGAAGTTCCAGCGCTCGAACCAGAACACCTGCA TCAACCAGCGTCCGCTGGTGCGCATGGGTGACCGGGTCAACAAGGGCGACATCATCGCCGACGGTCCGTCGACCGAGCTT GGTGATCTGGCGCTCGGCCGCAACGTGCTGGTCGCGTTCATGCCGTGGAACGGCTACAACTACGAGGACTCGATCCTGCT CTCCGAGCGTATCGTGGCCGACGACGTCTTCACCTCGATCCACATCGAGGAGTTCGAGGTCATGGCGCGCGATACCAAGC TCGGTCCGGAGGAAATCACGCGCGATATTCCAAACGTCTCGGAAGAAGCGCTGAAGAACCTCGACGAAGCCGGCATCGTC TATATCGGTGCGGAAGTGCAGCCGGGCGACATCCTGGTCGGCAAGATCACGCCGAAGGGCGAGAGCCCGATGACGCCGGA AGAGAAGCTTCTGCGCGCCATCTTCGGCGAAAAGGCTTCCGACGTGCGCGACACTTCGATGCGCATGCCTCCGGGCACTT TCGGCACCGTCGTCGAGGTGCGCGTGTTCAATCGCCACGGTGTGGAGAAGGACGAGCGCGCCATGGCGATCGAGCGCGAG GAGATCGAACGCCTCGCCAAGGATCGCGACGACGAGCAGGCCATTCTGGACCGTAACGTCTATGCGCGTCTTTCCGACGT TCTCGTCGGCAAGGAAGCGATCGCTGGACCGAAGGGCTTCAAGAAGGGCTCGACGCTGTCCAAGGACACGCTCGACGAGT ATCCGCGTTCGCAGTGGTGGCAGTTTGCGGTGGAGAACGAAAAGCTCCAGAGCGAACTGGAAGCCCTGCGTGGCCAGTAC GACGATTCCAAGAAGGCGCTCGAACAGCGCTTCATGGACAAGGTCGAGAAGGTGCAGCGCGGCGACGAAATGCCTCCGGG CGTCATGAAGATGGTCAAGGTCTTCGTGGCGGTGAAGCGCAAGATGCAGCCCGGCGACAAGATGGCCGGCCGTCACGGCA ACAAGGGTGTCGTGTCGCGTATCGTTCCGGTCGAGGACATGCCTTTCCTCGAGGACGGCACGCATGCCGATATCGTGCTC AACCCGCTGGGTGTGCCGAGCCGCATGAATGTCGGCCAGATCCTGGAAACGCATCTGGGCTGGGCCTGCGCTGGCATGGG CAGGAAGATCGGCGAGCTTATCGATGCGTACAAGACAGCCGGCGACATCAAGCCGCTGCGCAAGACGCTCGAGAGCTTCA TGCCGGCCAACGACCGCAACGAGCCGGTTCGCGAATATGACGACGAGAGCATCGTTCGCCTGAGCGAGCAGATGCGCCGC GGCGTCTCCATCGCGACCCCGGTGTTCGACGGCGCGCATGAGGCTGACATCAACATCATGCTGGAGCAGGCGGGCCTGCA CACCAGCGGTCAGTCGCAGCTCTATGACGGACGCACCGGCGAGCCGTTCGATCGCAAGGTGACGATGGGCTATATCTACA TGCTCAAGCTTCACCACCTCGTGGACGACAAGATCCACGCGCGTTCGATCGGTCCGTACTCGCTCGTCACCCAGCAGCCG CTGGGCGGCAAGGCGCAGTTCGGCGGCCAGCGCTTCGGCGAGATGGAGGTCTGGGCACTGGAAGCCTACGGCGCCGCTTA CACGCTGCAGGAAATGCTGACGGTGAAGTCGGACGACGTCGCCGGCCGCACCAAGGTCTACGAGGCGATCGTGCGTGGCG ACGACACGTTCGAGGCAGGCATTCCCGAGAGCTTCAACGTGCTCGTCAAGGAAATGCGGTCTCTCGGCCTCAATGTCGAG CTCGAGAACACCAAGCTCGACGACAACCCGATCCGGCTGCCCGATGCTGCCGAATAG Protein sequence : MAQTQTFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLQAVFKSVFPISDFSGSSMLEFVKYE FEGPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAKSIKDIKEQDVYMGDMPLMTLNGTFIVNGTERVIVSQMHRS PGVFFDHDKGKSHSSGKLLFAARVIPYRGSWLDIEFDSKDVVHARIDRRRKIPVTSLLMALGMDGEEILSTFYNKITYKR AGDHWRIPFNVERFRGLKAVGDLVDADTGEIVVEAGKKITARQARQLGEKGLKAIKATDEDLLGNYLAEDIVNYATGEIF LEAGDEIDDKTLKVLLGTGEQEIQVLDIDHVNVGAYIRNTLAVDKNESRQDALFDIYRVMRPGEPPTLETAEAMFNSLFF DSERYDLSAVGRVKMNMRLELKAEDTVRVLRKDDILAVVRTLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRVGLLR MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDV HPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIVDGKLTNDVVYLSAMEEAKHHVAQANAELDKNGGFV DEFVICRSAGEVMMAPRENVDLMDVSPKQMVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVAR DSGAAIGARRGGIVDQVDATRIVIRATEDLDPGKSGVDIYRLMKFQRSNQNTCINQRPLVRMGDRVNKGDIIADGPSTEL GDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIV YIGAEVQPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIERE EIERLAKDRDDEQAILDRNVYARLSDVLVGKEAIAGPKGFKKGSTLSKDTLDEYPRSQWWQFAVENEKLQSELEALRGQY DDSKKALEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKMQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHADIVL NPLGVPSRMNVGQILETHLGWACAGMGRKIGELIDAYKTAGDIKPLRKTLESFMPANDRNEPVREYDDESIVRLSEQMRR GVSIATPVFDGAHEADINIMLEQAGLHTSGQSQLYDGRTGEPFDRKVTMGYIYMLKLHHLVDDKIHARSIGPYSLVTQQP LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVE LENTKLDDNPIRLPDAAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Mesau_04256 | YP_007305975.1 | DNA-directed RNA polymerase, beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 60 |
| Mesau_04256 | YP_007305975.1 | DNA-directed RNA polymerase, beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 60 |
| Mesau_04256 | YP_007305975.1 | DNA-directed RNA polymerase, beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 59 |
| Mesau_04256 | YP_007305975.1 | DNA-directed RNA polymerase, beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 59 |
| Mesau_04256 | YP_007305975.1 | DNA-directed RNA polymerase, beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 59 |
| Mesau_04256 | YP_007305975.1 | DNA-directed RNA polymerase, beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 59 |
| Mesau_04256 | YP_007305975.1 | DNA-directed RNA polymerase, beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| Mesau_04256 | YP_007305975.1 | DNA-directed RNA polymerase, beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| Mesau_04256 | YP_007305975.1 | DNA-directed RNA polymerase, beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| Mesau_04256 | YP_007305975.1 | DNA-directed RNA polymerase, beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| Mesau_04256 | YP_007305975.1 | DNA-directed RNA polymerase, beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| Mesau_04256 | YP_007305975.1 | DNA-directed RNA polymerase, beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 59 |
| Mesau_04256 | YP_007305975.1 | DNA-directed RNA polymerase, beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 59 |
| Mesau_04256 | YP_007305975.1 | DNA-directed RNA polymerase, beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 58 |
| Mesau_04256 | YP_007305975.1 | DNA-directed RNA polymerase, beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 58 |
| Mesau_04256 | YP_007305975.1 | DNA-directed RNA polymerase, beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 57 |
| Mesau_04256 | YP_007305975.1 | DNA-directed RNA polymerase, beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 57 |
