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Name : rpoB (DESAM_23002) Accession : YP_007327368.1 Strain : Desulfovibrio hydrothermalis DSM 14728 Genome accession: NC_020055 Putative virulence/resistance : Unknown Product : RNA polymerase, beta subunit Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 3419178 - 3423281 bp Length : 4104 bp Strand : - Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2068078, 377281, 6266829, 7011900, 9893021; Product type e : enzyme DNA sequence : ATGGGTCAGCTCAGAAAAATATTTGGAAAGATCAAAGTCACATTACCGATTCCCCACTTGCTTGAATTGCAGGTGGATTC CTTCAAGAAATTTCTTCAGGAAGGCGTAGCACCTGCCAGCAGGTCCGATGTCGGTCTAGAAGGGGTTTTCCGTTCGGTTT TTCCGATTGAAGACTTCAATAAAACTGCAAGTCTTGAATATGTCAGTTATGACATAGGCGAGCCTAAATACGATATGGAC GAGTGTATTGCCAAGGGGCTGACTTATGAAGCTCCTATTCGTATCAAGGTCCGTCTTGTCGTTTTTGATGTAGACGAGGA AACCGAAAGCAGGACTATCCGCGACATTAAAGAGCAGGATATCTATTTCGGAACTGTACCGCTCATGAGTGAGCAGGGTA CATTTATTATAAATGGGACTGAACGTGTAATCGTAAACCAGTTGCAGCGTTCCCCCGGTATCATCTTTGAACATGATTCC GGTAAAACTCATACCAGCCGCAAAGTTCTTTACAGCTGCAGAATTATTCCCATGCGCGGCTCATGGCTGGATTTCGATTT TGACCATAAAGACATTCTTTATGTACGTATCGACAGACGGCGCAAAATGCCTGCGACTGTTCTGCTCAAAGCAATGGGAC TTTCCAAAAAAGATATTCTCGACTATTATTATAATGTTGAAGAATACAAAATTGACCGTCACATTGTTCGTCGTAAAGTT GTCGAGAATCAGTACCGTAAAGAAACAGCTTGGGTTGACCTTACTCTTGAAGATGGCAAAACCATCGTTGAGCGTGATAA GCCCATTACTAAGTTCGGCTGGAAAAAACTGGTTCGTGGCGGAGTTGAATACATCGAAGTTGATCCTAAGTGTATCGTAT CTCAGTTTGCTGCTTGTGATATTATAGATCCGGATACCGGAGAAGTAATTGCCGAAGCCGCTGATGAAATCACTGAAGAA ATCTTCGAAAGAATCTTGGAAGTAGGCCTCAAAGAAGTTAAGGTACTTCACACCATAGGTGCTGAAGTTTCTTCTTCTCT GCGCGACTCTCTCATGCTCGATAAAAGCACGGATGTTGAGTCTGCTCAGATTGAGATTTACCGCAGATTGCGCCCGAGTT CTCCTCCTACAGCAGAAATTGCAGCTAATTTCTTTGAGAATTTATTCCGCAGCTCTGACTATTATGACCTTTCCAGTGTT GGTCGTTATAAATTGAATGCTCGTCTCGGTGTAGATACTCCTCTGGAGCTTAGAACACTTACAAACGAAGACATTCTGCA AGCTGTTCTGCTTCTTTGCAGGCTTAAAGACAGTCACGGCCCTGCTGATGATATTGATAACCTCGGTAACAGGCGTGTAC GTCCGGTCGGTGAGCTGGTTGAAAACCAGTACAGAATCGGTCTGGTACGCATGGAAAGAGCCATCAAGGAGCGCATGAGC CTTCAAGAAGTGGCAACGCTCATGCCTCACGACCTCATCAATCCAAAACCTGTTGCTGCTGTGCTTAAAGAGTTCTTCGG AACATCTCAGTTGTCCCAGTTCATGGACCAGACCAACCCTCTTTCTGAGGTTACTCACAAGCGCAGACTTTCTGCACTTG GACCCGGTGGTCTTACCCGCGAACGTGCAGGATTCGAAGTTCGAGATGTTCATGTTTCTCACTACGGTAGAATCTGCCCT ATTGAGACCCCTGAAGGACCGAACATTGGTCTGATTGTTTCTTTGACCACATATTCAAAGGTCAATGACTTCGGATTCAT TGAAAGTCCTTACAGGACAATCAAAGATTCCACTATGACTGATGAAATTCTTTACTATGATGCCACCAGAGAAGTTGGTC ACGTAGTTGCTCAGGCTAACGCGCCGATTGACGAAAATGGTTCCTTTGCCAACCCCTTGGTTACCTCTCGCCGTAACGGT GATGTTTCCATGATGGCTCGTGAAGACGTAACACTCATGGATATCAGCCCGAGTCAGACCGTATCGGTTTCAGCTGCGCT GATTCCGTTTCTTGAGCATGATGATGCTAACCGTGCACTCATGGGATCTAACATGCAGCGTCAGGCTGTGCCGCTTCTTA AAACCTCCCAGCCTCTGGTTGGAACAGGAATGGAAGCTAACGTTGCACAGGATTCCGGAAGTTGCCTTCTTGCAGAACAT GATGGTTACATCGATTACGTTGATGCAGAGCGCCTTATCCTCAGATATGATGACGGTATTCTTGATGAAACTGGCGGAAC TAAGCATTACGAACTTCAGAAATGGCATAAGTCCAACCAGAACTCCTGCTACGGACAACGCCCCAGACTTCCTATCGGAA CTAGAGTCAAAAAGGGCGACGTCCTTGCTGATGGTCCCGGTATTAAAGATGGGGAGCTTGCTCTTGGTAAGAACCTGCTC GTAGCTTTCATGCCTTGGTGTGGATATAACTTTGAGGATTCCATCCTCATTTCCGAGCGTGTTGTTAAGGAAGACGTTTT CACCTCAGTTCATATTGAGGAGTTTGAACTCGTTGCCCGTGACACTAAACTCGGACCCGAAGAAGTCACTCGTGACATCC CCAACGTGAGTGAAGATATGCTCAGCAATCTTGACGAATGCGGAATCATTCGTCTGGGAGCGCGCATTTCTCCCGATGAT ATTCTTGTCGGAAAAATCACTCCTAAAGGGGAGACACAGCTTACTCCTGAAGAAAAGCTTCTTAGAGCCATTTTTGGAGA CAAAGCTCGTGACGTAAAAAATACCTCTCTCAAAGTGCCGCCGGGAATCGAAGGTACTATTGTAGATGTAAAAGTATTCA ATCGCAGATCCGGTGAAAAAGATGACCGTACCAAGGCCATCGAAGATTTCGAGCTTGCTAAGCATGATATGAAAGAAAGC AAGCACATTGAATCTCTCACCATTAAGACTCGTGCCAAGATTAATGCGATTGTTACTAATAAACAGATAGCTCAAACCCT TATGGGGCGCAGAAAGGGTGAAGTTCTTGCTGAAGCAGGACATACCATTACTGAAGAAATTCTTGCGGAAGTTCCGCTTA AGAAGCTCGGTGGGCTGTTTGCAGATAAAGATGTTAACGAAGCAGTAAGACAGCTTCTTGCTGAATACGATAAGCAGATC CGCGTAATCAAAGGCATCTATGATGTTAAGCGTGAGAAAGTCACTGAAGGTGATGATCTGCCTCCCGGTGTTATCAAAAT GGTCAAGGTCTACATTGCCGTTAAGCGTAAGCTCAGCGTTGGTGATAAAATGGCCGGACGTCATGGTAACAAAGGTGTTG TTTCCTGCATCCTGCCCGAACAGGACTTACCGTTCTTTGATGACGGAACCCCTGTTGATATAGTACTGAACCCGCTTGGT GTTCCATCTCGTATGAACATCGGGCAGATTATGGAAACTCATCTGGGCTGGGGAGCACTTGCACTAGGACAAAAGTTCGC GAAGATGCTCGATACAGGTGAAGCTCTTAGTGTTATCCGTCAGGAAATCAAGGATACTTTTGAATCCGAAGATGTTTATG AACTTATTGATTCATTAGATGATGAAGAGTTCAGACTGGCAGTCAACAAGGCCCGTGAGGGAATTGTAACTAAGACTCCT GTTTTTGATGGAGCTACTGAAGACGAAATTTGGGATCTGGTTAGCAAGACCGGTATTCCCGATGACGGTAAAGTAACTCT ATATGATGGACGTACCGGAGAACCTTTTCACAACCGTGTAACTGTCGGTGTCATGTACATCCTCAAGCTGCATCATCTCG TTGATGAAAAGATTCATGCTCGTTCCACCGGTCCTTACTCGCTGGTTACCCAGCAGCCTCTCGGTGGTAAGGCCCAGTTC GGTGGACAGCGTCTCGGGGAGATGGAAGTATGGGCACTTGAAGCATATGGCGCTGCCTACCTGCTTCAGGAGTTCCTCAC CGTCAAGTCTGATGACGTCACCGGTCGTGTCAAAATGTACGAGAAGATCGTCAAGGGAGATAACTTCCTTGAAGCCGGAC TGCCTGAATCATTTAACGTGTTGGTCAAAGAGCTTATGTCTCTGGGCCTTGATGTTAACTTGCTTCAGGACACCGGGGAA GATTCCTCCGACACAAAGAAATAA Protein sequence : MGQLRKIFGKIKVTLPIPHLLELQVDSFKKFLQEGVAPASRSDVGLEGVFRSVFPIEDFNKTASLEYVSYDIGEPKYDMD ECIAKGLTYEAPIRIKVRLVVFDVDEETESRTIRDIKEQDIYFGTVPLMSEQGTFIINGTERVIVNQLQRSPGIIFEHDS GKTHTSRKVLYSCRIIPMRGSWLDFDFDHKDILYVRIDRRRKMPATVLLKAMGLSKKDILDYYYNVEEYKIDRHIVRRKV VENQYRKETAWVDLTLEDGKTIVERDKPITKFGWKKLVRGGVEYIEVDPKCIVSQFAACDIIDPDTGEVIAEAADEITEE IFERILEVGLKEVKVLHTIGAEVSSSLRDSLMLDKSTDVESAQIEIYRRLRPSSPPTAEIAANFFENLFRSSDYYDLSSV GRYKLNARLGVDTPLELRTLTNEDILQAVLLLCRLKDSHGPADDIDNLGNRRVRPVGELVENQYRIGLVRMERAIKERMS LQEVATLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHVSHYGRICP IETPEGPNIGLIVSLTTYSKVNDFGFIESPYRTIKDSTMTDEILYYDATREVGHVVAQANAPIDENGSFANPLVTSRRNG DVSMMAREDVTLMDISPSQTVSVSAALIPFLEHDDANRALMGSNMQRQAVPLLKTSQPLVGTGMEANVAQDSGSCLLAEH DGYIDYVDAERLILRYDDGILDETGGTKHYELQKWHKSNQNSCYGQRPRLPIGTRVKKGDVLADGPGIKDGELALGKNLL VAFMPWCGYNFEDSILISERVVKEDVFTSVHIEEFELVARDTKLGPEEVTRDIPNVSEDMLSNLDECGIIRLGARISPDD ILVGKITPKGETQLTPEEKLLRAIFGDKARDVKNTSLKVPPGIEGTIVDVKVFNRRSGEKDDRTKAIEDFELAKHDMKES KHIESLTIKTRAKINAIVTNKQIAQTLMGRRKGEVLAEAGHTITEEILAEVPLKKLGGLFADKDVNEAVRQLLAEYDKQI RVIKGIYDVKREKVTEGDDLPPGVIKMVKVYIAVKRKLSVGDKMAGRHGNKGVVSCILPEQDLPFFDDGTPVDIVLNPLG VPSRMNIGQIMETHLGWGALALGQKFAKMLDTGEALSVIRQEIKDTFESEDVYELIDSLDDEEFRLAVNKAREGIVTKTP VFDGATEDEIWDLVSKTGIPDDGKVTLYDGRTGEPFHNRVTVGVMYILKLHHLVDEKIHARSTGPYSLVTQQPLGGKAQF GGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTGRVKMYEKIVKGDNFLEAGLPESFNVLVKELMSLGLDVNLLQDTGE DSSDTKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 53 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_007327368.1 | RNA polymerase, beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 54 |
| rpoB | YP_007327368.1 | RNA polymerase, beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 54 |
| rpoB | YP_007327368.1 | RNA polymerase, beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 54 |
| rpoB | YP_007327368.1 | RNA polymerase, beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 54 |
| rpoB | YP_007327368.1 | RNA polymerase, beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 54 |
| rpoB | YP_007327368.1 | RNA polymerase, beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 54 |
| rpoB | YP_007327368.1 | RNA polymerase, beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 53 |
| rpoB | YP_007327368.1 | RNA polymerase, beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 53 |
| rpoB | YP_007327368.1 | RNA polymerase, beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 53 |
| rpoB | YP_007327368.1 | RNA polymerase, beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 53 |
| rpoB | YP_007327368.1 | RNA polymerase, beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 53 |
| rpoB | YP_007327368.1 | RNA polymerase, beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 53 |
| rpoB | YP_007327368.1 | RNA polymerase, beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 53 |
| rpoB | YP_007327368.1 | RNA polymerase, beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 53 |
| rpoB | YP_007327368.1 | RNA polymerase, beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 53 |
| rpoB | YP_007327368.1 | RNA polymerase, beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 52 |
| rpoB | YP_007327368.1 | RNA polymerase, beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 52 |
