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Name : D781_0255 (D781_0255) Accession : YP_007342816.1 Strain : Serratia marcescens FGI94 Genome accession: NC_020064 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase, beta subunit Function : - COG functional category : - COG ID : - EC number : - Position : 267009 - 271037 bp Length : 4029 bp Strand : + Note : PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subuni DNA sequence : ATGGTTTACTCCTATACCGAGAAAAAACGTATTCGTAAGGATTTTGGTAAGCGTCCACAAGTGTTGGATGTACCATATCT CCTTTCTATCCAGCTTGACTCGTTCCAGAAGTTTATCGAGCAAGATCCAGAAGGGCAGTACGGCCTTGAAGCCGCATTCC GTTCTGTGTTCCCAATCCAGAGCTACAGTGGCAATTCGGAGCTGCAATACGTTAGCTACCGTCTTGGTGAGCCGGTGTTC GACGTCAAAGAGTGCCAGATCCGTGGTGTGACGTTCTCCGCACCGCTGCGCGTCAAACTGCGCCTGGTTATCTATGAGCG AGAAGCACCAGAAGGTACGGTCAAAGACATCAAGGAACAAGAAGTCTACATGGGCGAAATTCCGCTCATGACCGAAAACG GTACCTTTGTTATTAACGGTACTGAGAGGGTTATCGTATCCCAGCTGCACCGTAGTCCTGGCGTATTCTTCGACAGCGAT AAGGGTAAAACCCACTCGTCGGGTAAAGTGCTGTATAACGCACGCATCATCCCTTACCGTGGTTCCTGGCTGGACTTCGA GTTTGACCCGAAAGACAACCTGTTCGTGCGTATCGACCGCCGTCGTAAACTGCCGGCCTCGATCATTCTGCGCGCGCTGA ACTACACCTCAGAGCAGATCCTTGACCTGTTCTTCGAGAAAGTTGTTTTCGAAATCCGCGACAACAAGCTGCAGATGGAG CTGGTTCCAGAGCGTCTGCGTGGTGAGACCGCGTCGTTCGATATTGAAGCCAACGGCAAAATCTACGTTGAGAAAGGCCG TCGCATCACTGCTCGTCATATCCGCCAGCTTGAAAAAGACGATATCCAGAGCATCGAAGTGCCGGTTGAGTACATCGCGG GCAAAGTGGTCGCCAAAGACTACATCGATACCAATACCGGTGAACTGATTTGCGCCGCCAACATGGAGCTGTCGCTGGAT CTGCTGGCGAAGCTGAGCCAGTCTGGCCACAAGCGTATCGAAACGCTGTTCACCAACGATCTGGATCACGGCGCCTACAT CTCCGAGACGCTGCGTGTCGACCCGACCAATGACCGCCTGAGCGCGCTGGTTGAGATCTACCGCATGATGCGTCCTGGCG AGCCACCGACGCGTGAAGCGGCGGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGCTACGATCTGTCCGCGGTC GGCCGTATGAAGTTCAACCGCTCTCTGCTGCGCGATGACATCGAAGGTTCAGGCATCCTGAGCCAGGAAGACATCATCGA CGTAATGAAGAAGCTCATCGACATCCGTAACGGTAAAGGCGAAGTGGACGATATCGACCACCTCGGCAACCGTCGCATCC GCTCCGTGGGCGAAATGGCTGAGAACCAGTTCCGCGTAGGTCTGGTGCGCGTTGAGCGTGCGGTGAAAGAGCGTCTGTCT CTGGGCGATCTGGACACCCTGATGCCTCAGGACATGATCAACGCCAAGCCGATTTCGGCGGCGGTGAAAGAGTTCTTCGG CTCAAGCCAGCTGTCCCAGTTTATGGACCAGAACAACCCGCTGTCCGAGATTACGCACAAGCGTCGTATCTCCGCACTGG GCCCGGGCGGTCTGACCCGTGAGCGCGCCGGCTTCGAAGTACGTGACGTACACCCAACCCACTACGGTCGTGTATGTCCA ATCGAAACCCCGGAAGGTCCGAACATCGGTCTGATCAACTCCCTGTCCGTGTACGCACAGACTAACGAGTATGGCTTCCT GGAAACCCCGTACCGCCGCGTGCGTGACGGCGTGGTTACCGATGAAATCAACTACCTGTCTGCCATTGAAGAAGGCAACT TCGTTATCGCCCAGGCTAACTCCAACCTGGATGATGACGGCCGCTTCGTGGAAGACCTGGTCACCTGCCGCAGCAAAGGC GAATCCAGCCTGTTCAGCCGCGATCAGGTTGACTATATGGACGTATCCACCCAGCAGGTTGTTTCCGTTGGTGCCTCTCT GATTCCATTCCTGGAACACGATGACGCCAACCGTGCATTGATGGGTGCGAACATGCAACGTCAGGCGGTGCCAACCCTGC GTGCTGACAAGCCGCTGGTCGGTACCGGTATGGAGCGCGCAGTAGCGGTTGACTCCGGCGTTACCGCCGTTGCCAAACGC GGCGGTGTGATCCAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTACCCGGGCGAAGCAGG CATCGACATTTATAACCTGACCAAGTACACCCGTTCCAACCAGAACACCTGCATCAACCAGATGCCGTGTGTGAACCTGG GCGAACCTATCGAGCGCGGCGACGTGCTGGCAGACGGTCCGTCTACCGATCTGGGTGAGCTGGCGCTGGGTCAGAACATG CGTGTGGCGTTCATGCCTTGGAACGGCTACAACTTCGAAGACTCCATCTTGGTGTCCGAACGCGTTGTCCAGGAAGATCG CTTCACCACCATCCACATCCAGGAACTGGCTTGCGTGTCGCGCGACACCAAACTGGGGCCTGAAGAGATCACCGCCGATA TCCCGAACGTGGGTGAAGCAGCGCTCTCTAAACTGGATGAGTCAGGTATCGTCTACATCGGTGCGGAAGTGACCGGCGGC GACATTCTGGTAGGTAAGGTGACGCCGAAAGGTGAAACCCAGCTGACGCCGGAAGAGAAACTGCTGCGCGCGATCTTCGG TGAGAAAGCGTCCGATGTGAAAGACTCTTCTCTGCGTGTGCCGAACGGCGTTTCCGGTACCGTTATCGACGTGCAGGTCT TCACCCGCGATGGCGTGGAAAAAGACAAGCGTGCGCTCGAAATCGAAGAGATGCAGCTGAAGCAGGCGAAGAAAGACCTG ACTGAAGAACTGCAGATCCTGGAAGCCGGTCTGTTTGCGCGTATCCACGCGGTGCTGGTTGCCGGCGGCATTGAAGCTGA CAAGCTGAGCCAACTGCCGCGCGATCGCTGGCTGGAACTGGGCCTGACCGACGAAGAGAAGCAAAACCAGCTGGAACAGC TGGCCGAGCAGTACGACGAACTGAAAGCCGACTTCGAGAAGAAACTGGAAGCCAAGCGTCGTAAGATCACCCAAGGCGAC GATCTGGCACCTGGCGTGCTGAAAATCGTCAAGGTGTACCTGGCGGTTAAACGTCAGATCCAGCCGGGTGATAAAATGGC AGGTCGCCACGGTAACAAAGGTGTTATCTCCAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGCACGCCGG TAGACATCGTACTGAACCCGCTGGGCGTACCATCACGTATGAACATCGGTCAGATTCTGGAAACCCACCTGGGTATGGCG GCGAAAGGCATTGGTGAGAAGATCAACCAGATGCTCAAGCAGCAGCAGGAAGTGGCCAAACTGCGTGAATTCATCCAGAA AGCGTACGATCTGGGTGACGACGTTTGCCAGAAAGTTGACCTGAACACCTTCAGCGATGAAGAAGTGCTGCGCCTGGCGG AGAACCTGAAAAAAGGTATGCCGATCGCAACGCCGGTGTTCGATGGTGCGAAAGAGACTGAAATCAAGAAACTGCTGGAA ATGGGCGGTATCCCGACCTCCGGTCAGATCACGCTGTTCGATGGCCGTACCGGCGAGCAATTTGAGCGTCAGGTAACCGT AGGCTATATGTACATGCTGAAGCTGAACCACCTGGTCGACGATAAAATGCACGCTCGTTCAACCGGTTCTTACAGTCTGG TTACGCAGCAGCCTCTGGGTGGTAAAGCGCAGTTCGGTGGCCAACGCTTCGGTGAGATGGAAGTGTGGGCGCTGGAAGCA TACGGCGCAGCTTATACCCTGCAGGAAATGCTTACCGTTAAGTCGGATGACGTTAACGGCCGTACCAAGATGTACAAAAA CATCGTGGATGGCGACCACCGTATGGAACCGGGCATGCCGGAATCCTTCAACGTACTGTTGAAAGAGATCCGCTCGCTGG GTATCAACATCGAACTGGAAGACGAGTAA Protein sequence : MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVF DVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPASIILRALNYTSEQILDLFFEKVVFEIRDNKLQME LVPERLRGETASFDIEANGKIYVEKGRRITARHIRQLEKDDIQSIEVPVEYIAGKVVAKDYIDTNTGELICAANMELSLD LLAKLSQSGHKRIETLFTNDLDHGAYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV GRMKFNRSLLRDDIEGSGILSQEDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP IETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVTDEINYLSAIEEGNFVIAQANSNLDDDGRFVEDLVTCRSKG ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR GGVIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERGDVLADGPSTDLGELALGQNM RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL TEELQILEAGLFARIHAVLVAGGIEADKLSQLPRDRWLELGLTDEEKQNQLEQLAEQYDELKADFEKKLEAKRRKITQGD DLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA AKGIGEKINQMLKQQQEVAKLREFIQKAYDLGDDVCQKVDLNTFSDEEVLRLAENLKKGMPIATPVFDGAKETEIKKLLE MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 71 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 71 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| D781_0255 | YP_007342816.1 | DNA-directed RNA polymerase, beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 96 |
| D781_0255 | YP_007342816.1 | DNA-directed RNA polymerase, beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 96 |
| D781_0255 | YP_007342816.1 | DNA-directed RNA polymerase, beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 96 |
| D781_0255 | YP_007342816.1 | DNA-directed RNA polymerase, beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 96 |
| D781_0255 | YP_007342816.1 | DNA-directed RNA polymerase, beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 96 |
| D781_0255 | YP_007342816.1 | DNA-directed RNA polymerase, beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 93 |
| D781_0255 | YP_007342816.1 | DNA-directed RNA polymerase, beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| D781_0255 | YP_007342816.1 | DNA-directed RNA polymerase, beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 71 |
| D781_0255 | YP_007342816.1 | DNA-directed RNA polymerase, beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 71 |
| D781_0255 | YP_007342816.1 | DNA-directed RNA polymerase, beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 71 |
| D781_0255 | YP_007342816.1 | DNA-directed RNA polymerase, beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 71 |
| D781_0255 | YP_007342816.1 | DNA-directed RNA polymerase, beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 71 |
| D781_0255 | YP_007342816.1 | DNA-directed RNA polymerase, beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 71 |
| D781_0255 | YP_007342816.1 | DNA-directed RNA polymerase, beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| D781_0255 | YP_007342816.1 | DNA-directed RNA polymerase, beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 67 |
| D781_0255 | YP_007342816.1 | DNA-directed RNA polymerase, beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 64 |
| D781_0255 | YP_007342816.1 | DNA-directed RNA polymerase, beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 64 |
