Gene Information

Name : H045_10575 (H045_10575)
Accession : YP_007397676.1
Strain : Pseudomonas poae RE*1-1-14
Genome accession: NC_020209
Putative virulence/resistance : Virulence
Product : putative RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2449106 - 2449648 bp
Length : 543 bp
Strand : -
Note : COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

DNA sequence :

ATGCATGAGATTCCGGCCGCGTTGGGCGACTCTGTCCGCCAGCAAACGCTCACGGCACTGTACCGCGAGCATCATGGCTG
GTTGCACGGCTGGCTGCGCCGCAAACTGGGCTGTTCGCAGCATGCGGCGGACCTCGCTCACGATGCGTTCATCCGCGTCC
TGATGCTGGCCGAGCCGCAGGCGATCAAGGAGCCCCGCGCCTTTCTCGCGACCACGGCGGGCCGACTGTTGATCGACGGC
GCACGGCGTCGGCGTATTGAAAGAGCGTATAGGGAGGCGCTGGTCATTCAGTGCGAAGACGCCGGCATGCCAGATCCGGC
GGCGATTCATGTGGCCCTGCAGGCCCTCGAACGGATTGCCGAAATGCTCGCCGGGCTGCCTGCCAAGGCCCGCGAAGCCT
TCTTGCTGAGCCGCCTCGACGGGCTGACCTACCAGGAGATCGCCGAGCGCTTGGGCGTGTCCGCCAGCACCGTTAAAAAC
TACCTCTCCACCGCGCTGGTGCACTGCTACCACAGCCTGCATGGGGCGGATCCGCTGTCGTGA

Protein sequence :

MHEIPAALGDSVRQQTLTALYREHHGWLHGWLRRKLGCSQHAADLAHDAFIRVLMLAEPQAIKEPRAFLATTAGRLLIDG
ARRRRIERAYREALVIQCEDAGMPDPAAIHVALQALERIAEMLAGLPAKAREAFLLSRLDGLTYQEIAERLGVSASTVKN
YLSTALVHCYHSLHGADPLS

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	1e-29	48

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
H045_10575	YP_007397676.1	putative RNA polymerase sigma factor	VFG1049	Protein	4e-30	48