Gene Information

Name : H045_18505 (H045_18505)
Accession : YP_007399259.1
Strain : Pseudomonas poae RE*1-1-14
Genome accession: NC_020209
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4230546 - 4231064 bp
Length : 519 bp
Strand : +
Note : COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

DNA sequence :

TTGTCGTCAGTCCAGCCTCCCCACAGTGAGCTTGTTGGCGCGTTGTACCGCGACCATCGTGGCTGGCTGCTGGCCTGGCT
GCGGCGCAATGTGGCCTGCGCCAGCCGCGCCGAAGACCTCAGCCAGGACACCTTCGTGCGCCTGCTGGGGCGTACCGAAC
TGCGCGAACCCCGCGAACCGCGCGCCTTTCTGGTGGCCATCGCCAAGGGCCTGCTGTTCGACTACTTCCGTCGCGCGGCG
CTGGAACAGGCCTACCTCACCGAATTGATGCTGATCCCGGAGAGCGAACATCCCTCGCCCGAAGAACAGCAATTGATCCT
CGAAGACCTCAAAGCCATCGACCGCCTGCTCGGCAAACTCTCGAGCAAGGCCCGCGCCGCGTTTCTGCACAGCCGCCTCG
ATGGCATGGGCCACGCCGAAATCGCTCAGCGCCTGGGCGTCTCCGTGCCACGCGTGCGTCAGTACCTGGCCCAGGGGATA
CGCCAGTGCTACATCGCCTTGTACGGCCAGCCGCTGTGA

Protein sequence :

MSSVQPPHSELVGALYRDHRGWLLAWLRRNVACASRAEDLSQDTFVRLLGRTELREPREPRAFLVAIAKGLLFDYFRRAA
LEQAYLTELMLIPESEHPSPEEQQLILEDLKAIDRLLGKLSSKARAAFLHSRLDGMGHAEIAQRLGVSVPRVRQYLAQGI
RQCYIALYGQPL

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	2e-29	48

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
H045_18505	YP_007399259.1	RNA polymerase sigma factor	VFG1049	Protein	1e-29	48