Gene Information

Name : H045_02155 (H045_02155)
Accession : YP_007396003.1
Strain : Pseudomonas poae RE*1-1-14
Genome accession: NC_020209
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 465854 - 466342 bp
Length : 489 bp
Strand : -
Note : COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

DNA sequence :

TTGAGCCCGTCCACCACCGTCGAAGTCTTGTATCAGGACCATCACCACTGGCTCAACGGCTGGTTGCGACGCAAGCTCGG
CTGCGCGGAAAGTGCCGCGGACCTGGCGCAGGACACCTTCATGCGCGTGCTCACCGCGCCGCCAACACCCGCACTGATCG
AGCCTCGCGCGTTCCTCACTACCGTCGCCAAGCGCGTACTGTTCAACTTCTACCGCCGCCAGGACCTGGAGCGCGCCTAT
CTCGACGCCCTCGCGCAGATGCCGGAACAGGTCGCGCCATCGGAAGAAGAACGCGCGATCATCCTGCAAACCCTGCTGGA
ACTTGACCAGTTGCTGGACGGCCTGCCCACCCCCGTGAAACGGGCGTTCCTGCTGGCCCAACTCGATGGCCTGACCTACG
CGCAGATCGGTGCCGAACTGGGCATCTCCCTCGCCACCGTCAAGCGCCACCTGAACAAGGCGGCCATGCGCTGCTACTTC
GCCCTATGA

Protein sequence :

MSPSTTVEVLYQDHHHWLNGWLRRKLGCAESAADLAQDTFMRVLTAPPTPALIEPRAFLTTVAKRVLFNFYRRQDLERAY
LDALAQMPEQVAPSEEERAIILQTLLELDQLLDGLPTPVKRAFLLAQLDGLTYAQIGAELGISLATVKRHLNKAAMRCYF
AL

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	1e-31	51

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
H045_02155	YP_007396003.1	RNA polymerase sigma factor	VFG1049	Protein	4e-32	51