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Name : rpoB (SMWW4_v1c02790) Accession : YP_007404105.1 Strain : Serratia marcescens WW4 Genome accession: NC_020211 Putative virulence/resistance : Unknown Product : RNA polymerase, beta subunit Function : - COG functional category : - COG ID : - EC number : - Position : 309506 - 313534 bp Length : 4029 bp Strand : + Note : - DNA sequence : ATGGTTTACTCCTATACCGAGAAAAAACGTATTCGTAAGGATTTTGGTAAACGTCCACAAGTGCTGGACATACCATATCT CCTTTCTATCCAGCTTGACTCGTTCCAGAAGTTTATCGAGCAAGATCCAGAAGGGCAGTACGGCCTTGAAGCCGCATTCC GTTCTGTTTTCCCTATCCAGAGCTACAGTGGCAATTCGGAGCTGCAATACGTTAGCTACCGTCTTGGTGAGCCGGTCTTC GACGTCAAAGAGTGCCAGATCCGTGGTGTGACGTTCTCTGCACCGCTGCGCGTAAAACTGCGCCTGGTTATCTATGAGCG CGAAGCGCCTGAAGGTACGGTCAAAGACATCAAGGAACAAGAAGTCTACATGGGCGAAATTCCGCTCATGACCGAAAACG GCACCTTTGTGATCAACGGTACTGAGAGGGTTATCGTATCTCAGTTGCACCGTAGTCCTGGCGTATTCTTCGACAGCGAT AAGGGTAAAACCCATTCCTCGGGTAAAGTGCTGTACAACGCACGTATCATCCCTTACCGCGGTTCATGGTTGGACTTCGA GTTCGATCCGAAAGACAACCTGTTCGTGCGTATTGACCGTCGCCGCAAACTGCCTGCGACCATCATTCTGCGCGCGCTGA ACTACACCACTGAACAGATCCTCGACCTGTTCTTTGACAAGATCGTCTTCGAAATCCGCGACAACAAGCTGCAGATGGAG CTGGTGCCTGAGCGCCTGCGTGGTGAGACCGCTTCGTTCGATATCGAAGCCAACGGCAAGATCTACGTAGAGAAAGGCCG TCGTATCACCGCCCGTCATATCCGTCAGCTGGAAAAAGACGACATTCAGAGCATTGAAGTACCGGTAGAGTACATCGCGG GCAAAGTGGTCGCGAAAGACTATATCGATACCAATACCGGCGAACTGATCTGCGCAGCCAACATGGAGCTGTCGCTGGAT CTGCTGGCCAAGCTGAGCCAGTCCGGCCACAAGCGCATCGAAACGCTGTTCACCAACGATCTGGATCACGGCGCGTATAT CTCTGAAACGCTGCGTGTCGATCCGACCAACGATCGTCTGAGCTCGCTGGTAGAAATCTACCGCATGATGCGTCCTGGTG AGCCGCCAACGCGCGAAGCTGCCGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGCTACGATCTGTCCGCAGTC GGCCGTATGAAGTTCAACCGTTCTCTGCTGCGCGACGAGATCGAAGGTTCGGGCATCCTGAGCAAAGACGACATCATCGA AGTGATGAAGAAGCTCATCGATATCCGTAACGGCAAGGGCGAAGTGGACGATATCGACCACTTGGGCAACCGTCGTATCC GCTCCGTCGGCGAAATGGCCGAGAACCAGTTCCGCGTAGGTCTGGTGCGTGTTGAGCGTGCGGTGAAAGAGCGTCTGTCT CTGGGCGATCTGGATACCCTGATGCCTCAGGACATGATCAACGCCAAACCGATTTCGGCGGCGGTGAAAGAGTTCTTCGG CTCCAGCCAGCTGTCCCAGTTCATGGACCAGAACAACCCGTTGTCCGAGATCACGCACAAGCGTCGTATCTCTGCACTGG GCCCGGGCGGTCTGACCCGTGAGCGCGCCGGCTTTGAAGTTCGAGACGTACACCCGACCCACTACGGCCGCGTGTGCCCA ATCGAAACGCCGGAAGGTCCAAACATCGGTCTGATCAACTCCCTGTCCGTGTACGCACAGACTAACGAGTATGGCTTCCT GGAAACCCCGTACCGCCGCGTGCGCGACGGCGTGGTGACCGATGAAATCAACTACCTGTCTGCTATTGAAGAAGGCAACT TCGTTATCGCCCAGGCGAACTCCAACCTGGATGAAGAAGGCCGCTTCGTAGAAGACCTGGTCACCTGTCGTAGCAAAGGC GAATCAAGCCTGTTCAGCCGCGACCAGGTTGACTACATGGACGTATCCACCCAACAGGTTGTTTCCGTTGGTGCCTCACT GATTCCATTCCTGGAACACGATGACGCCAACCGTGCATTGATGGGTGCGAACATGCAACGTCAGGCCGTACCAACCCTGC GCGCTGACAAGCCGCTGGTCGGTACCGGTATGGAACGCGCTGTAGCGGTTGACTCCGGCGTAACCGCCGTTGCCAAACGC GGCGGTGTGATCCAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTACCCGGGCGAAGCAGG TATCGATATTTACAACCTGACCAAGTACACCCGTTCTAACCAGAACACCTGCATCAACCAGATGCCGTGTGTGAATCTGG GTGAGCCAATCGAGCGCGGCGACGTGCTGGCGGATGGCCCATCGACAGACCTGGGCGAACTGGCGCTGGGCCAGAACATG CGCGTAGCGTTCATGCCTTGGAACGGCTACAACTTCGAAGACTCCATCTTGGTCTCCGAGCGCGTGGTGCAGGAAGATCG CTTCACCACCATCCACATCCAGGAACTGGCGTGCGTGTCTCGCGACACCAAGCTGGGGCCTGAAGAGATCACCGCCGACA TCCCTAACGTGGGTGAAGCTGCGCTCTCCAAGCTGGATGAATCCGGTATCGTGTATATCGGTGCTGAAGTGACCGGTGGC GACATTCTGGTCGGTAAGGTAACGCCTAAAGGCGAAACCCAGCTGACGCCGGAAGAGAAACTGCTGCGTGCGATCTTCGG TGAGAAGGCGTCTGACGTTAAAGACTCTTCTCTGCGTGTGCCGAACGGCGTTTCCGGTACGGTTATCGACGTGCAGGTCT TCACCCGCGATGGCGTGGAAAAAGACAAGCGCGCGTTGGAAATCGAAGAGATGCAGCTGAAGCAGGCGAAGAAAGACCTG ACTGAAGAACTGCAGATCCTGGAAGCTGGTCTGTTCGCACGTATCCACGCGGTGCTGGTTGCCGGTGGCATCGAAGCCGA CAAGCTGAGCAAGCTGCCGCGCGATCGCTGGCTGGAACTGGGCCTGACCGACGAAGAGAAGCAAAACCAGCTGGAGCAGC TGGCTGAGCAGTACGACGAACTGAAATCCGACTTCGAGAAGAAGCTGGAAGCCAAGCGTCGTAAGATCACTCAGGGCGAC GATCTGGCGCCGGGCGTGCTGAAAATCGTCAAGGTTTATCTGGCCGTTAAACGTCAGATCCAACCGGGTGACAAGATGGC GGGCCGCCACGGGAACAAGGGTGTTATCTCCAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGCACGCCGG TTGACATCGTACTGAACCCGCTGGGCGTACCATCACGTATGAACATCGGTCAGATCCTGGAAACCCACCTGGGTATGGCT GCGAAAGGCATCGGTGAGAAGATCAACCAGATGCTGAAGCAGCAGCAGGAAGTGGCCAAGCTGCGTGAGTTCATCCAGAA GGCCTACGATCTGGGCGACGACGTTTGCCAGAAAGTTGACCTGAACACCTTCAGCGACGACGAAGTGCTGCGTCTGGCAG AGAACCTGAAAAAAGGTATGCCGATCGCAACGCCGGTGTTTGACGGTGCGAAAGAGACTGAAATCAAGAAGCTGCTGGAA ATGGGTGGTATCCCGACCTCCGGTCAGATCACGCTGTTCGATGGCCGTACCGGTGAGCAATTCGAGCGCCAGGTTACTGT TGGCTATATGTACATGCTGAAACTGAACCACTTGGTTGACGATAAAATGCACGCCCGTTCAACCGGTTCTTACAGCTTGG TTACTCAGCAACCTCTGGGTGGTAAAGCGCAGTTCGGTGGTCAACGCTTCGGTGAGATGGAAGTGTGGGCACTGGAAGCA TACGGCGCGGCTTATACCCTGCAGGAAATGCTCACCGTTAAGTCGGATGACGTTAACGGCCGTACCAAGATGTACAAAAA CATCGTGGATGGCGACCACCGGATGGAGCCAGGCATGCCGGAATCCTTCAACGTACTGTTGAAAGAAATCCGCTCGCTCG GCATCAACATCGAACTGGAAGACGAGTAA Protein sequence : MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVF DVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFDKIVFEIRDNKLQME LVPERLRGETASFDIEANGKIYVEKGRRITARHIRQLEKDDIQSIEVPVEYIAGKVVAKDYIDTNTGELICAANMELSLD LLAKLSQSGHKRIETLFTNDLDHGAYISETLRVDPTNDRLSSLVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV GRMKFNRSLLRDEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP IETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVTDEINYLSAIEEGNFVIAQANSNLDEEGRFVEDLVTCRSKG ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR GGVIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERGDVLADGPSTDLGELALGQNM RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL TEELQILEAGLFARIHAVLVAGGIEADKLSKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKSDFEKKLEAKRRKITQGD DLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA AKGIGEKINQMLKQQQEVAKLREFIQKAYDLGDDVCQKVDLNTFSDDEVLRLAENLKKGMPIATPVFDGAKETEIKKLLE MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 70 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 70 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_007404105.1 | RNA polymerase, beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 97 |
| rpoB | YP_007404105.1 | RNA polymerase, beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 97 |
| rpoB | YP_007404105.1 | RNA polymerase, beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 96 |
| rpoB | YP_007404105.1 | RNA polymerase, beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 96 |
| rpoB | YP_007404105.1 | RNA polymerase, beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 96 |
| rpoB | YP_007404105.1 | RNA polymerase, beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 93 |
| rpoB | YP_007404105.1 | RNA polymerase, beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| rpoB | YP_007404105.1 | RNA polymerase, beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 70 |
| rpoB | YP_007404105.1 | RNA polymerase, beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 70 |
| rpoB | YP_007404105.1 | RNA polymerase, beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 70 |
| rpoB | YP_007404105.1 | RNA polymerase, beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 70 |
| rpoB | YP_007404105.1 | RNA polymerase, beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 70 |
| rpoB | YP_007404105.1 | RNA polymerase, beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 70 |
| rpoB | YP_007404105.1 | RNA polymerase, beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| rpoB | YP_007404105.1 | RNA polymerase, beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 67 |
| rpoB | YP_007404105.1 | RNA polymerase, beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 64 |
| rpoB | YP_007404105.1 | RNA polymerase, beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 64 |
