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Name : papC (SMWW4_v1c06190) Accession : YP_007404445.1 Strain : Serratia marcescens WW4 Genome accession: NC_020211 Putative virulence/resistance : Virulence Product : outer membrane usher protein PapC Function : - COG functional category : - COG ID : - EC number : - Position : 692071 - 694593 bp Length : 2523 bp Strand : + Note : - DNA sequence : ATGAATCAGCGTGAATTACGTTTAAATAAAATAACGATTTTAATCAGTCTTGTTATCCTCTTTTCTGGTCGTGCGTCTGC CGTGGAATTTAATACTGACGTACTGGACACGGATGACAAGAAGAATATCGATTTTTCCCGGTTTTCCCGTGAAGGGTATA TCCTTCCCGGGACGTATCAGATGCAGGTGAAACTGAACGGCGACAGTCTGGGTAATGATATTGCCGTGCCGTTTTATGTG CGTCCAGGGCAAACGTCTTCGACGGATAAGTCCGAAGCGATGCCGGAAGCCTGTTTATCGCCAATCTGGCTCGACAAGCT GGGGTTGACGGAAGAGGCCCTGAAAAAAGTGGGGACCTGGCATCAGGGCGGGTGTGCGGATTTCACGGCACTGAAAGGCA CTGAGTTAAAAGCCGATATTGGCAGCAACATCCTCAATATCAACATGCCGCAGGCATGGTTGGAGTATTCGGACGCGTCC TGGTTGCCTCCGTCACGCTGGGATAACGGTATTCCGGGCATATTGCTGGATTACAACGCCAACGGCAACGTAACGAAAAC CCGCGGTAGCGATCAGCAACAAAACGCGGCTGTCAGTGGCACGGTGGGCGGGAATGCTGGTGCATGGCGTTTGCGGGCGG ATTATCAGGGCAGTTATGCCAACACCACGGGCCAGAACGGTTCATCGCAACACACATTCGATTTTACACGGGTGTATCTG TATCGGCCACTGCCTTCTTTGCAGGCGAAATTGACGCTGGGTGAAGATTACGTGAGCTCCAACATCTTCGATTCCTGGCG CTATACCGGTGCCAGCCTGGCCAGCGACGACAACATGCTGCCACCGAAGCTGCGAGGGTATGCGCCGGAAATCATCGGCG TGGCCAAGACCAATGCCCGGGTGACGGTCACGCAGCAGGGGCGCGTGGTGTACGACAGCACCGTGCCGGCCGGTCCGTTC CGTATTCAGAACCTGGACAGCGCCGTTCGCGGGCAGTTGGATGTAAAAGTGACCGAGCAGAACGGCGACGTGCAGACCTT CAGCGTGTCCACGGCGTCTGTACCGTACCTGACGCGACCCGGCCAGGTGCGTTATCAGCTGGTCACCGGCCGGCCGAGTA CCTGGGGGCATGATATTGAAGGGCCCGTGTTTGCCAATGGTGAGGCGTCATGGGGGATTTCCAACAGCTGGTCGCTGTAT GGCGGCAGTACGCTGTCGGATGATTACCAGGCGCTGGCGCTGGGGGTCGGGCGCGACCTGTTTGCGTTCGGTACGGTGGC CCTGGATGTCACGCAGTCTCTCGCGAAATTCCCCGACCAGGATAACCGTCAGGGCAAATCCTGGCGCGTCAGTTATTCCA AGCGTTTTGACGAGGCCAATACTGATGTGACCTTCGCGGGTTATCGCTTCTCCGAGCGCGACTATCTGAGTATGCAGCAG TACCTGGATGTGCGTTATCACGATAATGACAGCGGCCAGCAAAAAGAGCGGTACCAAATCAGCCTCAACAAGCGCTTTGA CGAACTGTCGTTGCCGTTATCTCTGGGGCTCAACTACCAGTACCAGACCTATTGGGACCAGGGAAACACCAGTCAGTACG GCGTGAATCTGGGGACCTGGTTTGACTTGCCTTCCCTGGGGGCGCGCAATGTGTCGCTGACGTTGACGGCGAACCGCAAT CAGTATCTGGGGCGTGAAGACAACGTCTTCAACCTGATGTTGTCGGTGCCGTTCGGCACCGGGACGGCCAGCTACAGCAG TACGTACAGTGATGACCGGTTTGGTCAGCGCGTGGGGTACTACGGCCGCGTCAATCAGCTCGACAGCTACAACCTGAATG CCGGCCTGGCGCAGGATAGCGGCCAATCGTCGCGCAGTGAATTCAATGGCATGTATACCCATAACGGCCCGCGTGCGGTG GTCAATGCCAATGTGGCCGTGGCCGAGCGCAGTTATTCCTCGTTTGGCATGAGTGCCAACGGCGGTCTGACGCTGACTGC TCAAGGGGCGGCACTGCATGCCGGTGGTTATAACGGCAGTACGCGTCTGATGGTGGATACCGATGGGGTCAGCGGCGTGC CGATTGATGGCGGGCGTGTGGTGACCAATGACTGGGGGGTCGGCGTGCTGACCAATGTGAACAGTTACTACCGTACGACC GCCCGGGTTGATGTCAACAAGATGGCGGACGATGTGGAAGCAACGCAGGGGGTGGTTGAGACCGCGTTGACGGAAGGGGC CATTGGTTATCGCCGCTTCGAAGTACTGAAGGGTGAGCGCCTGTTTGCGGTGCTGCGGTTGGCGGACGGCACATACCCGC CGTTTGGTGCCAGCGTCCGTGATGCCAAGGGAAGGGAACTGGGGCTTGTGGCAGACAGTGGTCTGGCTTGGCTCAGTGGT GTGACGCCTGACGCTGCGCTCGATGTGGCATGGGACGGTCGCAGTCGTTGCCAGGTGCAGGTGCCTGCACAATTGAACAG TCAGCAGCAGTTGCTGCTGCCGTGCACGGCGGTAAAACCGTAA Protein sequence : MNQRELRLNKITILISLVILFSGRASAVEFNTDVLDTDDKKNIDFSRFSREGYILPGTYQMQVKLNGDSLGNDIAVPFYV RPGQTSSTDKSEAMPEACLSPIWLDKLGLTEEALKKVGTWHQGGCADFTALKGTELKADIGSNILNINMPQAWLEYSDAS WLPPSRWDNGIPGILLDYNANGNVTKTRGSDQQQNAAVSGTVGGNAGAWRLRADYQGSYANTTGQNGSSQHTFDFTRVYL YRPLPSLQAKLTLGEDYVSSNIFDSWRYTGASLASDDNMLPPKLRGYAPEIIGVAKTNARVTVTQQGRVVYDSTVPAGPF RIQNLDSAVRGQLDVKVTEQNGDVQTFSVSTASVPYLTRPGQVRYQLVTGRPSTWGHDIEGPVFANGEASWGISNSWSLY GGSTLSDDYQALALGVGRDLFAFGTVALDVTQSLAKFPDQDNRQGKSWRVSYSKRFDEANTDVTFAGYRFSERDYLSMQQ YLDVRYHDNDSGQQKERYQISLNKRFDELSLPLSLGLNYQYQTYWDQGNTSQYGVNLGTWFDLPSLGARNVSLTLTANRN QYLGREDNVFNLMLSVPFGTGTASYSSTYSDDRFGQRVGYYGRVNQLDSYNLNAGLAQDSGQSSRSEFNGMYTHNGPRAV VNANVAVAERSYSSFGMSANGGLTLTAQGAALHAGGYNGSTRLMVDTDGVSGVPIDGGRVVTNDWGVGVLTNVNSYYRTT ARVDVNKMADDVEATQGVVETALTEGAIGYRRFEVLKGERLFAVLRLADGTYPPFGASVRDAKGRELGLVADSGLAWLSG VTPDAALDVAWDGRSRCQVQVPAQLNSQQQLLLPCTAVKP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 0.0 | 59 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 0.0 | 58 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 0.0 | 58 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 0.0 | 58 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 0.0 | 58 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 0.0 | 57 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 0.0 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| papC | YP_007404445.1 | outer membrane usher protein PapC | VFG1548 | Protein | 0.0 | 58 |
| papC | YP_007404445.1 | outer membrane usher protein PapC | VFG0884 | Protein | 0.0 | 58 |
| papC | YP_007404445.1 | outer membrane usher protein PapC | VFG0895 | Protein | 0.0 | 58 |
